Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0662 ATGGACTATTTCATTCGCTTTCATCACGTATCGCACGTGACGTGGTCGCGACCCAAACAAGGAGACGAACGACGGCTGGAGAAAGCATCGGCATCTACGTTGATGGGTACTCTTTTGAAATGCTACAGACCCCTCTTCTTGATGCTTCCCTATCCGGCTCGAACGATTCAAATCAGAACCAACCAGTTGAGCCCCGCCGGCATTTTCAGGAGGAAGAAGCAGGGTATGGTTACTCGTTGTTTTACTGCCAGTTCTTTGCGGTCTTCCCAGCCATCGATTACAGAACAGAGCTTCGGGAAATCCGACGGGGAGAGGATCAGGAATCCATCGCCAGAGCTGTGGCTTTATAACACGATGAGTAAAGAGAGGGAGCTGCTAAAACCTAAAGTGGAAGGAAAAGTTGGAATGTATGTCTGCGGAGTCACGACATATGATCTTAGCCATATTGGACATGCTCGTGTCTACATCAATTTTGACGTTCTTTACAGATATCTTAAGCATATGGAATTTGAAGTCTCTTATGTTCGCAATTTCACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAATTAGGAGAGGATCCAATCAGTTTGAGTCGACGCTATTGTAAAGAGTTTAATCAAGACATGGAAACTCTTCATTGTCTACCCCCTTCTGTGGAGCCACGAGTCTCAGAGCACATGCCCCAAATCATTAATATGATTGAGCAGATTATTAATAATGGGTATGCTTACGTTATTGATGGGGATGTGTACTTTGACGTTGAAAGATTTCCAGAATATGGAAAGTTATCTGGACGAGATCTTCAAGATAATCGAGCTGGCGAGAGGGTTGCTGTTGATTTAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCTTACCTTGGTTACTCTTTTGATATCCATGGTGGAGGGATCGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTAATGTAAGTCTCTGGGTGCACAATGGTTTTGTCACTGTGGACTCAGAGAAGATGTCCAAGTCTCTGGGGAATTTTTTCACCATAAGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGAGCCCATTATCGATCTCCTATTAACTACGCTCATGTACAGCTTGAAAGCGCTTCAGACCGTGTTTTCTACATATATGAGACTCTACATGAATGTGAAAGCTTTCTGTGCCAACATGATCTCACAAATAGGAAGGATTCCATCCCACCTGATACTTTAGATATTATTAACAAGTTTCATGATGTTTTTGTGGCTTCAATGTCCGATGACCTCCACACCCCAGTTGTATTGGCTGCACTGTCTGACCCATTGAAAGCAATCAATGATCTGCTGCATACTCGTAAGGGGAGGAAACGAGAATTGCGAATCGAATCACTTTCAGCTCTGGAGAAGAGTATAAGGAACGTTCTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCTGAGGTTTTGCAGCAGCTCAATGAAAAGGCTTTAAAGCGTGCAAACTTGACAGAAGAAGAAGTCTTACAGAAAATTAAAGAACGGGATGCTGCTAGAGTGAACAAGGAGTATGAAAAATCAGATTCAATTAGGAATGATTTGGCAGTTTTAGGTATTGCTCTGAAGGACAGTCCGAATGGCACAACGTGGAGGCCCACCATTCCTCTTTCACTTCAAGAACAGCAAACTCCTGCACCTTGA 1836 0.4357 MDYFIRFHHVSHVTWSRPKQGDERRLEKASASTLMGTLLKCYRPLFLMLPYPARTIQIRTNQLSPAGIFRRKKQGMVTRCFTASSLRSSQPSITEQSFGKSDGERIRNPSPELWLYNTMSKERELLKPKVEGKVGMYVCGVTTYDLSHIGHARVYINFDVLYRYLKHMEFEVSYVRNFTDVDDKIIARAKELGEDPISLSRRYCKEFNQDMETLHCLPPSVEPRVSEHMPQIINMIEQIINNGYAYVIDGDVYFDVERFPEYGKLSGRDLQDNRAGERVAVDLRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSNVSLWVHNGFVTVDSEKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYAHVQLESASDRVFYIYETLHECESFLCQHDLTNRKDSIPPDTLDIINKFHDVFVASMSDDLHTPVVLAALSDPLKAINDLLHTRKGRKRELRIESLSALEKSIRNVLTVLGLMPASYSEVLQQLNEKALKRANLTEEEVLQKIKERDAARVNKEYEKSDSIRNDLAVLGIALKDSPNGTTWRPTIPLSLQEQQTPAP 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0662 611 Pfam tRNA synthetases class I (C) catalytic domain 127 422 IPR032678 -
Lele04g0662 611 SUPERFAMILY Nucleotidylyl transferase 112 421 - -
Lele04g0662 611 Gene3D - 415 597 - -
Lele04g0662 611 PRINTS Cysteinyl-tRNA synthetase signature 136 147 IPR024909 -
Lele04g0662 611 PRINTS Cysteinyl-tRNA synthetase signature 172 181 IPR024909 -
Lele04g0662 611 PRINTS Cysteinyl-tRNA synthetase signature 301 319 IPR024909 -
Lele04g0662 611 PRINTS Cysteinyl-tRNA synthetase signature 332 353 IPR024909 -
Lele04g0662 611 Coils Coil 531 552 - -
Lele04g0662 611 FunFam Cysteine--tRNA ligase 112 413 - -
Lele04g0662 611 CDD CysRS_core 114 414 IPR032678 -
Lele04g0662 611 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 415 597 - -
Lele04g0662 611 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 453 597 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele04g0662 611 Pfam DALR domain 467 527 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Lele04g0662 611 PANTHER CYSTEINYL-TRNA SYNTHETASE 107 607 IPR024909 -
Lele04g0662 611 Hamap Cysteine--tRNA ligase [cysS]. 113 598 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lele04g0662 611 Gene3D HUPs 95 414 IPR014729 -
Lele04g0662 611 SMART dalr_2_4 466 535 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Lele04g0662 611 TIGRFAM cysS: cysteine--tRNA ligase 113 596 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0662 Lele-ChrLele04 3996952 4001477 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0662 04 3996952 4001477 Lele25g0634 25 3999303 4008222 CCT
Lele04g0662 04 3996952 4001477 Lele26g0648 26 4117136 4120503 CCT
Lele04g0662 04 3996952 4001477 Lele27g1452 27 20680162 20682620 CCT
Lele04g0662 04 3996952 4001477 Lele28g0631 28 4021626 4028849 CCT
Lele01g0656 01 3836906 3840120 Lele04g0662 04 3996952 4001477 hybridization
Lele02g0644 02 3847885 3852930 Lele04g0662 04 3996952 4001477 hybridization