Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0644 ATGTACACTGACTGGCGGCCGCGTTCTTTAGTTAATGGGGGTATTTCATTCACTTTCATCACATATCGCAGTTTTGAAGTGACCAGTTTAATCTTAGTATGACCCAAACAAGGAGACGAACGACGGCTGGAGAAAGCACCGGCATCTCCGTTAATGGGTACTCTTCTGAAATGCTACAGACCCCTCTTCTTGATGCTCCCCTATACGGCTCGAACGATTCAAATCAGAACCAACCAGTTGAGCCCCGCCTGCATTTTCAGGAGGAAGAAGCAGGGTATGGTTACTCGTTGTTTTACTGCCAGTTCTTTGCGGTCTTCCGAGCCATCGGTTACAGAACAGAGCTTCGGTAAATCCGACGGGGAGACGGTAAGGAATTCATCGCCAGAGCTGTGGCTTTATAACACGATGAGTAAAGAGCGAGAGCTGCTAAAACCTAAAGTGGAAGGAAAAGTTGGAATGTATGTCTGCGGAGTCACGACATATGATCTTAGCCATATTGGACATGCTCGTGTCTACATCAATTTTGACGTTCTTTACAGATATCTTAAGCATATGGAATTTGAAGTCTCTTATGTTCGCAATTTCACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAATTAGGAGAGGATCCAATCAGTTTGAGTCGACGCTATTGTGAAGAGTTTAATCAAGACATGGAAACTCTTCACTGTCTACCCCCTTCTGTGGAGCCACGAGTCTCAGAGCACATGCCCCAAATCATTAATATGATTGAGCAGATTATTAATAATGGGTATGCCTACGTTATTGATGGGGATGTGTACTTTGACGTTGAAAGATTTCCAGAATATGGGAAGTTATCTGGACGAGATCTTCAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTTAAGGAAAAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCATTTTGGGAGAGTACCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCATCTTACCTTGGTTACTCTTTTGATATCCATGGTGGAGGGATCGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTAATGTAAGTCTCTGGATGCATAATGGTTTTGTCACTGTGGACTCGGAGAAGATGTCCAAGTCTCTGGGGAATTTTTTCACCATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGAGCCCATTATCGATCTCCTATTAACTACTCTGATGTACAGCTTGAAAGTGCTTCAGACCGTGTTTTCTACATATATGAGACTCTACATGAATGTGAAAGCTTTTTGTGCCAACATGATCTCACAAATAGGAAGGATTCCATCCCACCTGATACTTTAGATATTATTAACAAGTTTCATGGTGTTTTTGTGGCTTCAATGTCCGATGATCTCCACACCCCAGTTGTATTGGCTGCACTGTCTGACCCATTGAAAGCAATCAATGATCTGCTGCATACTCGTAAGGGGAGGAAGCGAGAATTGCGAATCGAATCACTTTCAGCTCTGGAGAAGAGTATAAGGAACGTTCTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCTGAGGTTTTGCAGCAGCTCAATGAAAAGGCTTTAAAGCGTGCAAACTTGACAGAAGAAGAAGTCTTACAGAAAATTAAAGAACGGGATGCTGCTAGAGTGAACAAGGAGTATAAAAAATCAGATTCAATTAGGAATGATTTGGCAGTTTTAGGTATTGCTCTGAAGGACAGTCCGAATGGCACAACGTGGAGGCCCACCATTCCTCTTTCACTTCAAGAACAGCAAACTCCTGCAACTTGA 1887 0.4303 MYTDWRPRSLVNGGISFTFITYRSFEVTSLILVXPKQGDERRLEKAPASPLMGTLLKCYRPLFLMLPYTARTIQIRTNQLSPACIFRRKKQGMVTRCFTASSLRSSEPSVTEQSFGKSDGETVRNSSPELWLYNTMSKERELLKPKVEGKVGMYVCGVTTYDLSHIGHARVYINFDVLYRYLKHMEFEVSYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFNQDMETLHCLPPSVEPRVSEHMPQIINMIEQIINNGYAYVIDGDVYFDVERFPEYGKLSGRDLQDNRAGERVAVDLRKKNPADFALWKSAKPGEPFWESTWGPGRPGWHIECSAMSASYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSNVSLWMHNGFVTVDSEKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSDVQLESASDRVFYIYETLHECESFLCQHDLTNRKDSIPPDTLDIINKFHGVFVASMSDDLHTPVVLAALSDPLKAINDLLHTRKGRKRELRIESLSALEKSIRNVLTVLGLMPASYSEVLQQLNEKALKRANLTEEEVLQKIKERDAARVNKEYKKSDSIRNDLAVLGIALKDSPNGTTWRPTIPLSLQEQQTPAT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0644 628 CDD CysRS_core 131 432 IPR032678 -
Lele02g0644 628 Pfam tRNA synthetases class I (C) catalytic domain 144 439 IPR032678 -
Lele02g0644 628 TIGRFAM cysS: cysteine--tRNA ligase 130 613 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lele02g0644 628 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 432 614 - -
Lele02g0644 628 Hamap Cysteine--tRNA ligase [cysS]. 130 615 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lele02g0644 628 PRINTS Cysteinyl-tRNA synthetase signature 189 198 IPR024909 -
Lele02g0644 628 PRINTS Cysteinyl-tRNA synthetase signature 349 370 IPR024909 -
Lele02g0644 628 PRINTS Cysteinyl-tRNA synthetase signature 153 164 IPR024909 -
Lele02g0644 628 PRINTS Cysteinyl-tRNA synthetase signature 318 336 IPR024909 -
Lele02g0644 628 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 470 614 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele02g0644 628 Gene3D - 433 614 - -
Lele02g0644 628 PANTHER CYSTEINYL-TRNA SYNTHETASE 125 624 IPR024909 -
Lele02g0644 628 FunFam Cysteine--tRNA ligase 129 430 - -
Lele02g0644 628 Gene3D HUPs 111 432 IPR014729 -
Lele02g0644 628 SMART dalr_2_4 483 552 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Lele02g0644 628 SUPERFAMILY Nucleotidylyl transferase 129 439 - -
Lele02g0644 628 Coils Coil 548 569 - -
Lele02g0644 628 Pfam DALR domain 484 544 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0644 Lele-ChrLele02 3847885 3852930 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0644 02 3847885 3852930 Lele25g0634 25 3999303 4008222 CCT
Lele02g0644 02 3847885 3852930 Lele26g0648 26 4117136 4120503 CCT
Lele02g0644 02 3847885 3852930 Lele27g1452 27 20680162 20682620 CCT
Lele02g0644 02 3847885 3852930 Lele28g0631 28 4021626 4028849 CCT
Lele02g0644 02 3847885 3852930 Lele03g0656 03 3842611 3843233 hybridization
Lele02g0644 02 3847885 3852930 Lele04g0662 04 3996952 4001477 hybridization