Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0656 ATGTATGTCTGCGGAGTCACGGCATATGATCTTAACCATACTGGACATGCTCGTGTCTACATCAATTTTGACGTTCTTTACAGATATCTTAAGCATATGGAATTTGAAGTCTCTTATGTTCGCAATTTTAGTGACGTAGATGACAAGGTGAGTCACTATCTTCAAGATAATCGAGCTGGCGAGAGGGTTGCTGTTGATTCAAGGAAGAAAACTCCTGCTGATTTTGCTCTTTGGAAGAGTTGTGCTGCATGTAAGAAAAGTAATACGAGTATCTGGATGCACAATGGTTTTGTCACTGTGGACTCAGAGAAGATGTCCAAGTCTCTGGGAAATTTTTTCACCATGCGACAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGAGCCTATTATCGATCTCCTATCAACTACTCTCATGTACAGCTTGAAAGTACATCAGACCGTGTTTTCTACATATATGAGACTCTACATGAATGTGAAAGCTTTCTGTGCCAACATGATCTCACAAATAGGAAGGATTCCATCCCACCTGCTACTTTAGATATTATTAATAAGTTTCATGATGTTTTTGTGGCTTCAATATCCGATGACCTACACACCCCAGTTGTATTGGCTGCACTGTCTGACCCATTGAAAGCAATCAATGATCTTCTGCATACTCGCAAGGGGAGGAAACGAGAATTGCCAATCGAATCACTTTCAGCTCTGGAGAAGAGTATCAGGAACGTTCTGACTGTTTTAGGACTTATGCCTGCAAGTTATTCTGAGATTTTGCAGCAGCTCAATGAGAAGGCTTTAAAGCGTGCAAACTTGACAGAAGAAGTCGTCTTACAGAAAATTAAAGAACGGGATGCTGCTAGAATGAACAAGGAGTATGAAAAATCAGATGCAATTAGGAATGATTTGGCAGTTTTAGGTATTGCTCTGAAGGACAGTCCGAACAGTACAACGTGGAGGCCCGCCATTCCTCTTTTCACTTCAAGAACAGCAGACCACTGCACCGTGAAGAGCCATTAA 1032 0.4128 MYVCGVTAYDLNHTGHARVYINFDVLYRYLKHMEFEVSYVRNFSDVDDKVSHYLQDNRAGERVAVDSRKKTPADFALWKSCAACKKSNTSIWMHNGFVTVDSEKMSKSLGNFFTMRQVVDVYHPLALRYFLMGAYYRSPINYSHVQLESTSDRVFYIYETLHECESFLCQHDLTNRKDSIPPATLDIINKFHDVFVASISDDLHTPVVLAALSDPLKAINDLLHTRKGRKRELPIESLSALEKSIRNVLTVLGLMPASYSEILQQLNEKALKRANLTEEVVLQKIKERDAARMNKEYEKSDAIRNDLAVLGIALKDSPNSTTWRPAIPLFTSRTADHCTVKSH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0656 343 Pfam tRNA synthetases class I (C) catalytic domain 1 52 IPR032678 -
Lele01g0656 343 Pfam tRNA synthetases class I (C) catalytic domain 81 150 IPR032678 -
Lele01g0656 343 SUPERFAMILY Nucleotidylyl transferase 1 160 - -
Lele01g0656 343 Coils Coil 259 279 - -
Lele01g0656 343 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 181 324 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele01g0656 343 PANTHER CYSTEINYL-TRNA SYNTHETASE 1 50 IPR024909 -
Lele01g0656 343 Gene3D HUPs 1 62 IPR014729 -
Lele01g0656 343 Gene3D HUPs 79 143 IPR014729 -
Lele01g0656 343 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 143 325 - -
Lele01g0656 343 Gene3D - 144 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0656 Lele-ChrLele01 3836906 3840120 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0656 01 3836906 3840120 Lele25g0634 25 3999303 4008222 CCT
Lele01g0656 01 3836906 3840120 Lele26g0648 26 4117136 4120503 CCT
Lele01g0656 01 3836906 3840120 Lele27g1452 27 20680162 20682620 CCT
Lele01g0656 01 3836906 3840120 Lele28g0631 28 4021626 4028849 CCT
Lele01g0656 01 3836906 3840120 Lele03g0656 03 3842611 3843233 hybridization
Lele01g0656 01 3836906 3840120 Lele04g0662 04 3996952 4001477 hybridization