Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0233 ATGTGTTGCCTAGGCCGCAATGACTTGCAGAGGATTTTTGAGAAGCTGGACAAGAACGGCGATGGCTATGTTAGCCTTGAAAGTCTAAAGAGACTGATGGAGAATATAGGTTTCAGTTTTGGAGCAGAGGAGGTTGAGTCTCTTGTGGGGAAGAAGAGACTGAACTTGGAAGAGTTCCTGATGTTTTACGACTCGATATCGAGCAGTAATAGCAGTGGGGAGACCAGAGGGGGTCGTGAAGAAGGAGAAGAAGAAGAAGAGCTAGTGAAGGCGTTCGAGGTGTTCGACATGGACGGAGATGGGTTCATCAGCAGCCAAGAGGTGGAGTGTGTGCTCAAGAGGCTGGGCTTGTGGGATCCCAAGAGCTGCAGAGACTGCGCCTCCATGATCGGCGTTTATGACTCCAATTCCGATGGCCTCCTTGATTTCCAGGAATTCAAGAACATGATGTTTTTTACCATCCCTTGA 468 0.4893 MCCLGRNDLQRIFEKLDKNGDGYVSLESLKRLMENIGFSFGAEEVESLVGKKRLNLEEFLMFYDSISSSNSSGETRGGREEGEEEEELVKAFEVFDMDGDGFISSQEVECVLKRLGLWDPKSCRDCASMIGVYDSNSDGLLDFQEFKNMMFFTIP 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0233 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Lele25g0233 155 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Lele25g0233 155 Gene3D - 74 153 - -
Lele25g0233 155 SUPERFAMILY EF-hand 7 151 IPR011992 -
Lele25g0233 155 SMART efh_1 8 36 IPR002048 GO:0005509
Lele25g0233 155 SMART efh_1 125 153 IPR002048 GO:0005509
Lele25g0233 155 SMART efh_1 87 115 IPR002048 GO:0005509
Lele25g0233 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 54 151 - -
Lele25g0233 155 Pfam EF-hand domain pair 7 107 IPR002048 GO:0005509
Lele25g0233 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Lele25g0233 155 Gene3D - 5 64 - -
Lele25g0233 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lele25g0233 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Lele25g0233 155 CDD EFh 88 150 IPR002048 GO:0005509
Lele25g0233 155 Pfam EF hand 133 150 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0233 Lele-ChrLele25 1363203 1363670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0233 4 153 EF-hand Containing Proteins AT1G21550 41.447 1.15e-35 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0233 25 1363203 1363670 Lele01g0277 01 1557877 1558350 CCT
Lele25g0233 25 1363203 1363670 Lele02g0263 02 1496028 1496489 CCT
Lele25g0233 25 1363203 1363670 Lele03g0282 03 1552863 1553336 CCT
Lele25g0233 25 1363203 1363670 Lele04g0269 04 1594997 1595458 CCT
Lele02g0274 02 1554444 1569744 Lele25g0233 25 1363203 1363670 CCT
Lele04g0281 04 1654502 1664999 Lele25g0233 25 1363203 1363670 CCT
Lele25g0233 25 1363203 1363670 Lele27g1854 27 23367769 23368412 hybridization
Lele25g0233 25 1363203 1363670 Lele28g0255 28 1470020 1470756 hybridization