Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1854 ATGATCACCAACCTCAGCCGCAATGACTTGCAGAGGATTTTTGAGAAGCTGGACAAGAACGGCGATGGTCATGTTAGCCTTGAAAGTCTAAAGAGACTAATGGAGAATATAGGTTTCAGTTTTGGAGCAGAGGAGGTTGAGTCTATAGTGGGGAAGAAGAGACTGAACTTGGAAGAGTTCTTGATGTTTTACGACTCGATATCGAGTAGTAATAGCAGTGGGGAGACCAGAGGGGGTAGTGAAGAAGGAGAAGGAGAAGAAGAGCTAGTGAAGGCGTTCGAGGTGTTCGACATGGACGGAGATGGATTCATCAGCAGCCAAGAGGTGGAGTGTGTGCTCAAGAGGCTGGGCTTGTGGGATCCCAAGAGCTGCAGAGATTGCGCCTCCATGATCGGCGTTTATGACTCCAATTCCGATGGCCTCCTGGATTTCCAGGAATTTAAGAACATGATGTTGCTTACCATCCCTTGA 471 0.4798 MITNLSRNDLQRIFEKLDKNGDGHVSLESLKRLMENIGFSFGAEEVESIVGKKRLNLEEFLMFYDSISSSNSSGETRGGSEEGEGEEELVKAFEVFDMDGDGFISSQEVECVLKRLGLWDPKSCRDCASMIGVYDSNSDGLLDFQEFKNMMLLTIP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1854 156 Gene3D - 76 154 - -
Lele27g1854 156 Pfam EF hand 9 36 IPR002048 GO:0005509
Lele27g1854 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lele27g1854 156 SMART efh_1 9 37 IPR002048 GO:0005509
Lele27g1854 156 SMART efh_1 88 116 IPR002048 GO:0005509
Lele27g1854 156 SMART efh_1 126 154 IPR002048 GO:0005509
Lele27g1854 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 54 151 - -
Lele27g1854 156 Gene3D - 5 65 - -
Lele27g1854 156 ProSiteProfiles EF-hand calcium-binding domain profile. 122 156 IPR002048 GO:0005509
Lele27g1854 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lele27g1854 156 SUPERFAMILY EF-hand 3 153 IPR011992 -
Lele27g1854 156 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Lele27g1854 156 ProSitePatterns EF-hand calcium-binding domain. 135 147 IPR018247 -
Lele27g1854 156 CDD EFh 89 151 IPR002048 GO:0005509
Lele27g1854 156 Pfam EF-hand domain pair 87 151 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1854 Lele-ChrLele27 23367769 23368412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1854 5 152 EF-hand Containing Proteins AT1G21550 42.953 4.39e-37 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0274 02 1554444 1569744 Lele27g1854 27 23367769 23368412 CCT
Lele04g0281 04 1654502 1664999 Lele27g1854 27 23367769 23368412 CCT
Lele25g0233 25 1363203 1363670 Lele27g1854 27 23367769 23368412 hybridization
Lele26g0243 26 1413910 1414371 Lele27g1854 27 23367769 23368412 hybridization