Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0277 ATGTCTCCCCTTACACCCAGTGACTTGCATCGAATCTTTCAGAAGCTGGACAGGAACGAGGATGGCTTGGTGAGCCTTGAAGAGCTAAAATGGCTGCTTGACAAGATAGGTTATGAGATTAGCCAAGACGAGCTTGAAACTTCCGTCGGAAAAAGGAACCTGGACTTGAATGAGTTCTCCTCCTTCTGGGACTCCATATCGAAGCAGAAAAATAACAGGGGGGATGAAGGAGAAGGTGGTGATGGGGCTGACGTGGAGAGTGACCTGGCGAGGGCCTTCGAGGTGTTTGACTTGGACGGAGATGGCTTCATCACGGGCCCAGAACTGGAGTGCGTGTTGAAGAGGCTCCACTTATGGGACGACCAAAACGGCAGGGACTGCTCCGCCATGATTTGCGCCTACGACACCAACTCTGATGGTCGCCTCGATTTCCAGGAGTTCAAGAGCATGATGCTCCTTACCTCTTCTTCTTGA 474 0.5169 MSPLTPSDLHRIFQKLDRNEDGLVSLEELKWLLDKIGYEISQDELETSVGKRNLDLNEFSSFWDSISKQKNNRGDEGEGGDGADVESDLARAFEVFDLDGDGFITGPELECVLKRLHLWDDQNGRDCSAMICAYDTNSDGRLDFQEFKSMMLLTSSS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0277 157 Gene3D - 1 153 - -
Lele01g0277 157 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lele01g0277 157 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lele01g0277 157 SMART efh_1 88 116 IPR002048 GO:0005509
Lele01g0277 157 SMART efh_1 126 154 IPR002048 GO:0005509
Lele01g0277 157 SMART efh_1 8 36 IPR002048 GO:0005509
Lele01g0277 157 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lele01g0277 157 CDD EFh 88 151 IPR002048 GO:0005509
Lele01g0277 157 Pfam EF hand 12 30 IPR002048 GO:0005509
Lele01g0277 157 ProSiteProfiles EF-hand calcium-binding domain profile. 122 157 IPR002048 GO:0005509
Lele01g0277 157 SUPERFAMILY EF-hand 7 153 IPR011992 -
Lele01g0277 157 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lele01g0277 157 ProSitePatterns EF-hand calcium-binding domain. 135 147 IPR018247 -
Lele01g0277 157 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 151 - -
Lele01g0277 157 FunFam Calmodulin A 5 154 - -
Lele01g0277 157 Pfam EF-hand domain pair 87 151 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0277 Lele-ChrLele01 1557877 1558350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0277 2 152 EF-hand Containing Proteins AT1G21550 47.059 3.80e-38 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0233 25 1363203 1363670 Lele01g0277 01 1557877 1558350 CCT
Lele01g0277 01 1557877 1558350 Lele01g0277 01 1557877 1558350 ECH
Lele01g0277 01 1557877 1558350 Lele03g0282 03 1552863 1553336 hybridization
Lele01g0277 01 1557877 1558350 Lele04g0269 04 1594997 1595458 hybridization