Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0281 ATGGCCCCTGTGCCTGCGCTCTCAAATTCGTACTTCTTTGCTTTAAAACCTCTTCCGAAAGCAACTCCCTTAAATGCCAATGTCGCCTTTATTGTACCATCTTCTTCTGTTTCCTCCTGGCGTCGGCTGCCTCCACGTTATGGCAGGCGCACACCCGTTGTGGCGTCTGTGAAGGAGAATATGGGCCGCATTAAGAAAACAATCGACGATTTCGCGAGCTTGAACTACTGGGTTGTTCGTGACTACTATCGTCTGGTGGACTCTGTCAATGCCTTTGAGCCGCAGATACAGAGACTCTCCGATGAGCAGTTGACTGCGAAAACTCAGGAGTTTCGTCTTCGGCTTAAGCGAGGGGATTCGCTTGCTGATATTCAAGCTGAGGCATTTGCTGTTGTTCGTGAAGCTGCAAGAAGAAAACTTGGAATGCGGCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGATGGGTCCATTGCGGAAATGAAAACGGGGGAAGGAAAAACATTAGTTTCCACCTTAGCCGCTTATCTTAATGCCTTGACTGGCGAGGGTGTCCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTATTCATCGATTCTTAGGTCTTTCCGTGGGTCTGATTCAGAGGGGGATGACTGCTGAAGAGCGGAGATCTAATTATAGATGTGATATAACATATACCAACAATTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGAACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTAGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGTGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCTGAATTGCTTATACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTTGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAGTGACCCCTGGGCTAGATTTGTGATGAATGCTTTGAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCCTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTAGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCGGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTGAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACGAATCTCCCCAACATTCGGAAAGATTTGCCTATCCAAGCGTTTGCTACTGCTAGGGGCAAATGGGAGCAGGTTCGCTGTGAAGTTGATTATATGTTTAGACAAGGTCGTCCAGTCTTAGTAGGGACAACCAGCGTAGAAAATTCTGAACTTTTGTCTGGTCTGCTTAAGGAATGGAATATTCCCCATAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGATTGTTGCACAGGCAGGGCGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGTGGAAATCCTAAAATGCTAGCCAGAGAAATTATAGAGGACAGCTTACTTTCGTTTTTGACGCCAGAGGCTTCTAATATTGAACTGTTTGGGGAGGCAATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCACTGGCTTTATTGGCTAAGACAGCCTTAATGGCTAAATATGTATCCAAAAGCGAAGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTCATCTCAGAGGCTATTGAAATGAGTCAGTCATATAATTTGGATGATTTGGAAAAGCTTGCAAATGAAGAATCTGAGATGTACCCTCTTGGTCCAGCAGTAGCACTTGCCTATTTGTCAGTTTTGGAGGATTGTGAAAAGCACTGTTTGAATGAAGGGTCTGAGGTGAAAAGACTTGGGGGCCTTCATGTAATTGGTACATCTTTGCATGAGTCCCGAAGAATTGACAACCAGCTCCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTCTGGTCAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCAGTGAGACTTATATCAAAGATTACAAACGATGAGGATTTGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTCTTAGCACTGCAAATTAATGCAGAGAAGTTCTTCTTTGGAGTGAGAAAGAGCCTTGTCGAGTTTGATGAAGTGTTAGAGGTCCAACGAAAGCATGTGTATGACCTTAGGCAGTTAATTCTAACAGGAGATGATGAAAGTTGTTCCCAACACATATACCAGTACATGCAAGCTGTGGTGGATGAGATTGTCTTCAGTAACGTTGATCTGCAAAAGCATCCAGGTAGTTGGAATTTGAGTAAACTTATTAAGGAGTATATGACAATTGGTGGAAAGCTGTTGCATGAATGTTTTACAGGGATTACTAGAGACACTTTGCTGAAGTCACTAGAGCAATTTCATGATGTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTGCCATCACCTCCAAATGCCTTCCGGGGAATTCGCCGGAAGGGCTCTTCATTAAGACGTTGGCTTACTATATGCTCTGATGATTTAATCAAGGATGGAAATTTTCGGACAGTCTCTAATCTTCTTCGCAAGTACCTTGGAGATTTTTTAATTGCTTCATATTTAAATGTTGTTCAAGAGTCTGGTTATGACGAGAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTGTGAAAACGCTAGATAGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGTTCAGCGGTAAATGTAAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTTAGTGCAACTCGAAGGTTGACCGTGGAGTCACTGCTGCAATATTGGGCATCTCCAATGGAATCCCAAGAACTATTTGATTTCTAG 3165 0.4275 MAPVPALSNSYFFALKPLPKATPLNANVAFIVPSSSVSSWRRLPPRYGRRTPVVASVKENMGRIKKTIDDFASLNYWVVRDYYRLVDSVNAFEPQIQRLSDEQLTAKTQEFRLRLKRGDSLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAEERRSNYRCDITYTNNSELGFDYLRDNLAGSSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDESDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRCEVDYMFRQGRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTPEASNIELFGEAISQKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFISEAIEMSQSYNLDDLEKLANEESEMYPLGPAVALAYLSVLEDCEKHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFLVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGVRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIYQYMQAVVDEIVFSNVDLQKHPGSWNLSKLIKEYMTIGGKLLHECFTGITRDTLLKSLEQFHDVGSIDIVNFSLPNLPSPPNAFRGIRRKGSSLRRWLTICSDDLIKDGNFRTVSNLLRKYLGDFLIASYLNVVQESGYDERHVKEIERAVLVKTLDSFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFDF 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0281 1054 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 53 1051 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 Gene3D - 462 768 IPR027417 -
Lele04g0281 1054 ProSiteProfiles SecA family profile. 64 768 IPR014018 -
Lele04g0281 1054 SUPERFAMILY Helical scaffold and wing domains of SecA 772 870 IPR036266 -
Lele04g0281 1054 SMART SecA_PP_bind_2 292 403 IPR011130 GO:0016020|GO:0017038
Lele04g0281 1054 CDD SF2_C_secA 465 736 IPR044722 -
Lele04g0281 1054 FunFam Protein translocase subunit SecA 771 890 - -
Lele04g0281 1054 SUPERFAMILY Helical scaffold and wing domains of SecA 945 1051 IPR036266 -
Lele04g0281 1054 FunFam Protein translocase subunit SecA 82 303 - -
Lele04g0281 1054 FunFam Preprotein translocase SecA subunit 293 413 - -
Lele04g0281 1054 FunFam Protein translocase subunit SecA 912 1041 - -
Lele04g0281 1054 PRINTS SecA protein signature 458 471 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 178 188 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 124 148 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 231 251 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 421 438 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 384 406 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 PRINTS SecA protein signature 162 176 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 SUPERFAMILY Pre-protein crosslinking domain of SecA 291 412 IPR036670 GO:0016020|GO:0017038
Lele04g0281 1054 CDD DEXDc_SecA 103 459 - -
Lele04g0281 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 749 IPR027417 -
Lele04g0281 1054 Gene3D Helical scaffold and wing domains of SecA 771 878 - -
Lele04g0281 1054 Gene3D Helical scaffold and wing domains of SecA 910 1044 - -
Lele04g0281 1054 TIGRFAM secA: preprotein translocase, SecA subunit 89 861 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 Pfam SecA DEAD-like domain 79 446 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lele04g0281 1054 Gene3D - 83 460 IPR027417 -
Lele04g0281 1054 SMART SecA_DEAD_2 64 447 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lele04g0281 1054 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 313 IPR014001 -
Lele04g0281 1054 Hamap Protein translocase subunit SecA [secA]. 63 1044 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele04g0281 1054 Pfam SecA Wing and Scaffold domain 766 1041 IPR011116 GO:0016020|GO:0017038
Lele04g0281 1054 Pfam SecA preprotein cross-linking domain 299 403 IPR011130 GO:0016020|GO:0017038
Lele04g0281 1054 Gene3D - 293 413 - -
Lele04g0281 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 460 IPR027417 -
Lele04g0281 1054 ProSitePatterns SecA family signature. 547 562 IPR020937 GO:0006605|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0281 Lele-ChrLele04 1654502 1664999 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0281 04 1654502 1664999 Lele25g0233 25 1363203 1363670 CCT
Lele04g0281 04 1654502 1664999 Lele26g0243 26 1413910 1414371 CCT
Lele04g0281 04 1654502 1664999 Lele27g1854 27 23367769 23368412 CCT
Lele04g0281 04 1654502 1664999 Lele28g0255 28 1470020 1470756 CCT
Lele04g0281 04 1654502 1664999 Lele04g0281 04 1654502 1664999 ECH
Lele02g0274 02 1554444 1569744 Lele04g0281 04 1654502 1664999 hybridization