Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0274 ATGGATGCTATCTCTAGTGACACTAGTAATATAGATAAGCACGAAGCAATTTGTGAGTATGCCTTTAAATATGATGATTTCATTAGCCCAGAGGGTTTGTTTGAATTATTGCTGAAGGAGACTATTACTCTAGAGAGTGGGCGCTCAAGATACCCTGTTGGATATAGCTCTGATGTATGGTCATTGGGCTGTGTGATGCTGCGCCTTCTTTTTGGGAATGCTCTCCCGCGGTATTCATTGGAAATGAATAAGGAGAAGAAAGGCATTGACCTTCTAGCCAATTACATTTGTTGGGTGGAGAGAGTTGATTCCTTTTTGGAAGATAAATTGGGATCAGAGTATTTGCCGTTGGGGCATACTCTTAGCAAATGTTTGGAAATAGATCCAGGAAATCGCCCAGATGTAGCAGGTGTGAGAAAATGCATTTGGTATATGCTCATCAAACCTCCATTTGATGTTATAGGAACCTTGGAGGTTGCAATAGATGGAAACACTGCACATTGCTGCTTGATTCTAGGGGACTTGTGTCAGTTTCCCTTGAAATCCTCAAAACCACAGAGAGAATGTGAGTTGCAGGATAAAGAAGATGGTGATCTGGTTCAGCAAGGGAAGGAGAAACCTGATGAGATTTTAAGGAAATGGCTGAAAGGTCATGAGAATAAAGTCATGGCTTTGGTTTATGTGGATGGAGAAGAACCCTTGTGCATAAGTGGTGACAGTGGAGGGGGTATATTTATCTGGGAAATAACTTCCCCTTTTGGGCCAAACCCACTGAGAAAGTGGTATGAGCAGAAGGATTGGCGTTTTAGTGGGATCCATTTTATGGCTGTTTCAAGAAATATTTGCCTCTACACTGGTAGTGGTGATAGATCAATAAAAGCTTGGTCATTGGAGGTGAGTTTGAGATTTGCTTTGGTATCTGGAAAGAAAAATTTGTTTGAAATGAATTATATGGATTTCTGTACGTTTTCCCAGGATGGAACTCTAATGTGCACAATGAATGGGCATACATCTGTTGTCTCCATACTCGCAATACGTGATGTTTTTCTTTACAGTGGTAGTTGGGATGGTACAATTAGGTTGTGGAGTCTTAATGATCACAGCCTGTTGACAGTATTGGGGGAGGATGTGCCTGGAGAGGTGAAAGCTGTCCTGTCTATTACAGTCAATAGACATCTTCTTGTTGCGTCTCATGAAAATGGATGCATAAAGCTTAGGTGCAAGCAGAGCACTGCTATGGCAACTGTGCCTGCCCTCTCAAATTCGTTCTTGTTTGCTTTAAAACCTCTTCCGAAAGCAACTTCCTTAAATGCCAATGTTGCCTTTATTGTACCATCTTCTGTTTCATCCTGGCGTCGGCTGCCTCCACGTTATGGCAGGCGCACACCCGTTGTTGCGTCTGTGAAGGAGAATATGGGCCGCATTAAGAAAACAATCGACGATTTCGCGAGCTTGAACTACTGGGTTGTTCGCGACTACTATCGTCTGGTGGACTCTGTCAATACCTTTGAGCCGCAGATACAGAGACTCTCCGATGAGCAGTTGACTGCGAAAACTCAGGAGTTTCGGCTTCGGCTTAAGAGAGGGGATTCGCTTCCTGATATTCAAGCTGAGGCATTTGCTGTTGTTCGTGAAGCTGCAAGAAGAAAACTTGGAATGCGGCATTTTGATGTCCAGATTATTGGTGGAGCGGTGCTTCATGATGGGTCCATTGCAGAAATGAAAACGGGGGAGGGAAAAACATTAGTTTCCACCTTAGCGGCTTATCTTAATGCCTTGACTGGCGAGGGTGTCCATGGACCTGCTTCTTCCTTGGCTTTCTCTCAATCCTCCTTTGTTGCAGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTATTCATCGATTCTTAGGTCTTTCCGTGGGTCTTATTCAGAGGGGGATGACTGCTGAAGAGCGGAGATCTAATTATAGATGTGATATAACATATACCAACAATTCGGAACTTGGCTTTGACTACCTACGAGATAATCTTGCTGGAAGTAGTGGACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTCGATGAAGTAGACTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATTAGTGGTGAGGCCAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCTGAATTGCTTATACGGGGAATTCATTATAATGTGGAGCTTAAAGATAATTCTGTTGAATTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAGGTGACCCCTGGGCTAGATTTGTGATGAATGCTTTGAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATAGTCAGAGATGGGAAGGCCTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGACGGGATTCACCAGGCTGTAGAGGCAAAGGAAGGTCTAAAGATTCAGGCAGATTCAGTTGTTGTAGCACAGATCACATACCAATCATTATTTAAACTCTATCCAAAGTTGTCGGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTGAAAATGTTCCAGATGCCAGTCATCGAAGTGCCCACGAATCTCCCCAACATTCGGAAAGATTTTCCTATCCAAGCGTTTGCTACTGCTAGGGGAAAATGGGAGCAGGCTCGCTGTGAAGTTGATTATATGTTTAGACAAGGTCGTCCAGTCTTAGTAGGGACAACCAGCGTAGAAAATTCTGAACTTTTGTCTGGTCTGCTTAAGGAATGGAATATTCCCCATAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAGATTGTTGCACAGGCAGGGCGTAAAAATGCCATTACAATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGTGGAAATCCTAAAATGCTAGCCAGAGAAATTATAGAGGACAGCTTACTTTCGTTTTTGACGCCAGAGGCTTCTAATATTGAACTTTTTGGGGAGGCAATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCACTGGCTTTATTGGCTAAGGCAGCCTTAATGGCTAAATATGTATCCAAAAGCGAAGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTCATCTCACAGGCTATTGAAATGAGTCAGTCATATAATTTGGATGATTTGGAAAAGCTTGCAAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACGGTGGCACTTGCCTATTTGTCAGTTTTGGAGGATTGTGAAAAGCACTGTTTGAATGAAGGGTCTGAGGTGAAAAGAGTTGGGGGCCTTCATGTAATTGGTACATCTTTGCATGAGTCCCGAAGAATTGACAACCAGCTCCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCAGTGAGACTTATATCAAAGATTACAAACGATGAGGATTTGCCAATTGAGGGTGATGCCATTGTCAAGCAGCTCCTAGCACTGCAAATTAATGCAGAGAAGTTCTTCTTTGGAGTGAGAAAGAGCCTTGTCGAGTTTGATGAAGTGTTAGAGGTCCAACGAAAGCATGTTTATGACCTTAGGCAGTTAATTCTAACAGGAGATGATGAAAGTTGTTCCCAACACATATACCAGTACATGCAAGCTGTGGTGGATGAGATTGTCTTCAGTAACGTTGATCCGCAAAAGCATCCAGGTATTTGGAATTTGAGTAAACTTATTAAGGAGTATATGACAATTGGTGGAAAGCTGTTGCATGAATCTTTTGCAGGGATTACTAGAGACACTTTGCTGAAGTCACTAGATCAATTGCATGATGTGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATTTGCCGGCACCTCCAAATGCATTCCGCGGAATTCGCCGGAAGGGCTCTTCATTAAGACGTTGGCTTACCATATGCTCTGATGATTTAATCAAGGATGGAAATTTTCGGACGGTCTCTAATCTTCTTCGCAAGTACCTTGGAGATTTTTTAATTGCTTCATATTTAAATGTTGTTCAAGAGTCTGGTTATGACGAGAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTGTGAAGACGCTAGATAGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGTTCAGCGGTAAATGTAAGGAGTTTTGGACATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATCTCCATGCTTAGTGCAACTCGAAGGTTGACCGTGGAGTCACTGCTGCAATATTGGGCATCTCCAATGGAATCCCAAGAACTATTTGATTTCTAG 4443 0.4249 MDAISSDTSNIDKHEAICEYAFKYDDFISPEGLFELLLKETITLESGRSRYPVGYSSDVWSLGCVMLRLLFGNALPRYSLEMNKEKKGIDLLANYICWVERVDSFLEDKLGSEYLPLGHTLSKCLEIDPGNRPDVAGVRKCIWYMLIKPPFDVIGTLEVAIDGNTAHCCLILGDLCQFPLKSSKPQRECELQDKEDGDLVQQGKEKPDEILRKWLKGHENKVMALVYVDGEEPLCISGDSGGGIFIWEITSPFGPNPLRKWYEQKDWRFSGIHFMAVSRNICLYTGSGDRSIKAWSLEVSLRFALVSGKKNLFEMNYMDFCTFSQDGTLMCTMNGHTSVVSILAIRDVFLYSGSWDGTIRLWSLNDHSLLTVLGEDVPGEVKAVLSITVNRHLLVASHENGCIKLRCKQSTAMATVPALSNSFLFALKPLPKATSLNANVAFIVPSSVSSWRRLPPRYGRRTPVVASVKENMGRIKKTIDDFASLNYWVVRDYYRLVDSVNTFEPQIQRLSDEQLTAKTQEFRLRLKRGDSLPDIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHGPASSLAFSQSSFVAVVTVNDYLAQRDAEWMGRIHRFLGLSVGLIQRGMTAEERRSNYRCDITYTNNSELGFDYLRDNLAGSSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGIHYNVELKDNSVELTEEGIALAEMALETNDLWDEGDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSDGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDFPIQAFATARGKWEQARCEVDYMFRQGRPVLVGTTSVENSELLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTPEASNIELFGEAISQKVLPKIKVGSSSLALLAKAALMAKYVSKSEGKSWTYQKAKSFISQAIEMSQSYNLDDLEKLANEESEMYPLGPTVALAYLSVLEDCEKHCLNEGSEVKRVGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGVRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIYQYMQAVVDEIVFSNVDPQKHPGIWNLSKLIKEYMTIGGKLLHESFAGITRDTLLKSLDQLHDVGSIDIVNFSLPNLPAPPNAFRGIRRKGSSLRRWLTICSDDLIKDGNFRTVSNLLRKYLGDFLIASYLNVVQESGYDERHVKEIERAVLVKTLDSFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLQYWASPMESQELFDF 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0274 1480 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 464 1477 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 ProSiteProfiles SecA family profile. 475 1194 IPR014018 -
Lele02g0274 1480 SMART WD40_4 326 363 IPR001680 GO:0005515
Lele02g0274 1480 SMART WD40_4 366 407 IPR001680 GO:0005515
Lele02g0274 1480 SMART WD40_4 254 296 IPR001680 GO:0005515
Lele02g0274 1480 SMART WD40_4 208 248 IPR001680 GO:0005515
Lele02g0274 1480 Hamap Protein translocase subunit SecA [secA]. 474 1470 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g0274 1480 FunFam Preprotein translocase SecA subunit 719 839 - -
Lele02g0274 1480 Pfam SecA Wing and Scaffold domain 1192 1467 IPR011116 GO:0016020|GO:0017038
Lele02g0274 1480 SMART SecA_PP_bind_2 718 829 IPR011130 GO:0016020|GO:0017038
Lele02g0274 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1175 IPR027417 -
Lele02g0274 1480 TIGRFAM secA: preprotein translocase, SecA subunit 500 1287 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 365 - -
Lele02g0274 1480 CDD DEXDc_SecA 514 885 - -
Lele02g0274 1480 Pfam SecA preprotein cross-linking domain 725 829 IPR011130 GO:0016020|GO:0017038
Lele02g0274 1480 SUPERFAMILY Helical scaffold and wing domains of SecA 1371 1477 IPR036266 -
Lele02g0274 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 886 IPR027417 -
Lele02g0274 1480 SUPERFAMILY Pre-protein crosslinking domain of SecA 717 838 IPR036670 GO:0016020|GO:0017038
Lele02g0274 1480 Gene3D - 719 839 - -
Lele02g0274 1480 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 372 IPR001680 GO:0005515
Lele02g0274 1480 Pfam SecA DEAD-like domain 490 872 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lele02g0274 1480 SUPERFAMILY WD40 repeat-like 211 405 IPR036322 GO:0005515
Lele02g0274 1480 FunFam Protein translocase subunit SecA 493 728 - -
Lele02g0274 1480 Gene3D - 888 1194 IPR027417 -
Lele02g0274 1480 SUPERFAMILY Protein kinase-like (PK-like) 51 154 IPR011009 -
Lele02g0274 1480 Gene3D Helical scaffold and wing domains of SecA 1197 1313 - -
Lele02g0274 1480 Gene3D - 188 421 IPR015943 GO:0005515
Lele02g0274 1480 SUPERFAMILY Helical scaffold and wing domains of SecA 1198 1300 IPR036266 -
Lele02g0274 1480 CDD SF2_C_secA 891 1162 IPR044722 -
Lele02g0274 1480 Gene3D - 494 886 IPR027417 -
Lele02g0274 1480 PRINTS SecA protein signature 589 599 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 PRINTS SecA protein signature 535 559 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 PRINTS SecA protein signature 847 864 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 PRINTS SecA protein signature 573 587 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 PRINTS SecA protein signature 884 897 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 PRINTS SecA protein signature 810 832 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lele02g0274 1480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 561 739 IPR014001 -
Lele02g0274 1480 Gene3D Helical scaffold and wing domains of SecA 1343 1467 - -
Lele02g0274 1480 FunFam Protein translocase subunit SecA 1197 1316 - -
Lele02g0274 1480 FunFam Protein translocase subunit SecA 1338 1467 - -
Lele02g0274 1480 Gene3D Transferase(Phosphotransferase) domain 1 12 146 - -
Lele02g0274 1480 ProSitePatterns SecA family signature. 973 988 IPR020937 GO:0006605|GO:0006886|GO:0016020
Lele02g0274 1480 SMART SecA_DEAD_2 475 873 IPR011115 GO:0005524|GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0274 Lele-ChrLele02 1554444 1569744 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g0274 02 1554444 1569744 Lele25g0233 25 1363203 1363670 CCT
Lele02g0274 02 1554444 1569744 Lele26g0243 26 1413910 1414371 CCT
Lele02g0274 02 1554444 1569744 Lele27g1854 27 23367769 23368412 CCT
Lele02g0274 02 1554444 1569744 Lele28g0255 28 1470020 1470756 CCT
Lele02g0274 02 1554444 1569744 Lele02g0274 02 1554444 1569744 ECH
Lele02g0274 02 1554444 1569744 Lele04g0281 04 1654502 1664999 hybridization