Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0263 ATGTCTCCCCTCACACCCGGTGACTTGCAGCGAATTTTTGAGAAGCTGGACATGAACGAGGATGGGTTGGTGAGCCTTGAGGAGCTAAAATGGCTGCTCGACAAGATAGGCTATGAGTTTGGCCCCGACGAGCTTGAAAATTTCGTCGGAAAAAGGAACCTCGACTTGAATGAGTTCTCCTCCTTCTGCGACTCCATATCGAGGCAGAACAATAACAGAGGAGATGAAGATGGGGCTGACGTGGAGAGTGACCTGGCGAAGGCCTTCCAGGTGTTTGACTTGGACGGAGATGGCTTCATCACCGGCCCAGAACTGGAGTGCGTGTTGAAGAGGCTCCACTTATGGGACGACCAAGACGCCAACGACTGCTCCGCCATGATTTGCGCCTACGACACCAACTCAGATGGTTGCCTCGATTTCCAGGAGTTCAAGAACATGATGCTCCTTACCTCTTCTTCTTGA 462 0.5195 MSPLTPGDLQRIFEKLDMNEDGLVSLEELKWLLDKIGYEFGPDELENFVGKRNLDLNEFSSFCDSISRQNNNRGDEDGADVESDLAKAFQVFDLDGDGFITGPELECVLKRLHLWDDQDANDCSAMICAYDTNSDGCLDFQEFKNMMLLTSSS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0263 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lele02g0263 153 SMART efh_1 8 36 IPR002048 GO:0005509
Lele02g0263 153 SMART efh_1 84 112 IPR002048 GO:0005509
Lele02g0263 153 SMART efh_1 122 150 IPR002048 GO:0005509
Lele02g0263 153 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lele02g0263 153 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Lele02g0263 153 Pfam EF hand 9 30 IPR002048 GO:0005509
Lele02g0263 153 CDD EFh 84 147 IPR002048 GO:0005509
Lele02g0263 153 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lele02g0263 153 FunFam Calmodulin A 5 150 - -
Lele02g0263 153 Pfam EF-hand domain pair 83 147 IPR002048 GO:0005509
Lele02g0263 153 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Lele02g0263 153 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lele02g0263 153 Gene3D - 3 149 - -
Lele02g0263 153 SUPERFAMILY EF-hand 8 149 IPR011992 -
Lele02g0263 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0263 Lele-ChrLele02 1496028 1496489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0263 2 148 EF-hand Containing Proteins AT1G21550 48.366 6.20e-40 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0233 25 1363203 1363670 Lele02g0263 02 1496028 1496489 CCT
Lele02g0263 02 1496028 1496489 Lele02g0263 02 1496028 1496489 ECH
Lele02g0263 02 1496028 1496489 Lele03g0282 03 1552863 1553336 hybridization
Lele02g0263 02 1496028 1496489 Lele04g0269 04 1594997 1595458 hybridization