Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0269 ATGTCTCCCCTCACACCCAGTGACTTGCCGCGAATTTTTGAGAAGCTGGACATGAACGAGGATGGCATGGTGAGCCTTGAGGAGCTAAAATGGCTGCTCGACAAGATAGGCTATGAGTTTGGCCCCGACGAGCTTGAAAATTTCGTCGGAAAAAGGAACCTGGACTTGAATGAGTTCTCCTCCTTCTGCGACTCCATATCGAAGCAGAACAATAACAGAGGAGATGAAGATGGGGCTGACGTGGAGAGTGACCTGGCGAAGGCCTTCCAGGTGTTTGACTTGGACGGAGATGGCTTCATCACCGGCCCAGAACTGGAGTGCGTGTTGAAGAGGCTCCACTTATGGGACGACCAAAACGCCAACGACAGCTCCGCCATGATTTGCGCCTACGACACCAACTCAGATGGTCGCCTCGATTTCCAGGAGTTCAAGAACATGATGCTCCTCACCTCTTCTTCTTGA 462 0.5195 MSPLTPSDLPRIFEKLDMNEDGMVSLEELKWLLDKIGYEFGPDELENFVGKRNLDLNEFSSFCDSISKQNNNRGDEDGADVESDLAKAFQVFDLDGDGFITGPELECVLKRLHLWDDQNANDSSAMICAYDTNSDGRLDFQEFKNMMLLTSSS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0269 153 SMART efh_1 8 36 IPR002048 GO:0005509
Lele04g0269 153 SMART efh_1 84 112 IPR002048 GO:0005509
Lele04g0269 153 SMART efh_1 122 150 IPR002048 GO:0005509
Lele04g0269 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lele04g0269 153 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lele04g0269 153 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Lele04g0269 153 CDD EFh 84 147 IPR002048 GO:0005509
Lele04g0269 153 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lele04g0269 153 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Lele04g0269 153 Gene3D - 2 149 - -
Lele04g0269 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 54 147 - -
Lele04g0269 153 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lele04g0269 153 FunFam Calmodulin A 5 150 - -
Lele04g0269 153 SUPERFAMILY EF-hand 8 149 IPR011992 -
Lele04g0269 153 Pfam EF hand 13 30 IPR002048 GO:0005509
Lele04g0269 153 Pfam EF-hand domain pair 83 147 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0269 Lele-ChrLele04 1594997 1595458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0269 2 148 EF-hand Containing Proteins AT1G21550 47.059 7.15e-38 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0233 25 1363203 1363670 Lele04g0269 04 1594997 1595458 CCT
Lele04g0269 04 1594997 1595458 Lele04g0269 04 1594997 1595458 ECH
Lele01g0277 01 1557877 1558350 Lele04g0269 04 1594997 1595458 hybridization
Lele02g0263 02 1496028 1496489 Lele04g0269 04 1594997 1595458 hybridization