LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g0255	ATGCCCGCGAAACTTCCCGGCCCATTCTTTTCTAACGTCTTCATCCAAATCAATTTAACCTGGATTCAAAGATCAATCCCCCCATTTGACATATATATTATGCATTCCCTGAGCCGCAATGACTTGCAGAGGGTTTTTGAGAAGCTGGACAAGAGCGGCGACGGTTATATAAGCCTTGAGAATCTAAAGAGACTAATGGAGAATATAGGTTGCAGGTTTGGAGAAGAGGAGGTTGAGTCTCTTGTGGGGAAGAAGAGACTGAACTTGGACGAGTTCTTGATGTTTTACGATTCCATATCGAGTTGTAATAGTAGCGGCGAGACAAGAGGGGGCGATGAAGATCAAGAAGAAGAGCTAGTGAAGGCGTTCGAGGTGTTCGACATGGACGGAGATGGATTCATCAGCAGCCAAGAGGTGGAGTGTGTGCTCAAGAGGCTGGGCTTGTGGGATCCCAAGAGCTGCAGAGATTGCGCTTCCATGATAGGCGTTTATGACTCCAATTCCGATGGCCTCCTTGATTTCCAGGAATTTAAGAACATGATGTTGCTTACCATCCCTTGA	561	0.4652	MPAKLPGPFFSNVFIQINLTWIQRSIPPFDIYIMHSLSRNDLQRVFEKLDKSGDGYISLENLKRLMENIGCRFGEEEVESLVGKKRLNLDEFLMFYDSISSCNSSGETRGGDEDQEEELVKAFEVFDMDGDGFISSQEVECVLKRLGLWDPKSCRDCASMIGVYDSNSDGLLDFQEFKNMMLLTIP	186

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g0255	186	Pfam	EF-hand domain pair	117	181	IPR002048	GO:0005509
	Lele28g0255	186	Pfam	EF hand	41	68	IPR002048	GO:0005509
	Lele28g0255	186	ProSiteProfiles	EF-hand calcium-binding domain profile.	37	72	IPR002048	GO:0005509
	Lele28g0255	186	SUPERFAMILY	EF-hand	39	182	IPR011992	-
	Lele28g0255	186	Gene3D	-	37	97	-	-
	Lele28g0255	186	ProSiteProfiles	EF-hand calcium-binding domain profile.	114	149	IPR002048	GO:0005509
	Lele28g0255	186	CDD	EFh	41	95	IPR002048	GO:0005509
	Lele28g0255	186	PANTHER	CALCIUM BINDING PROTEIN	88	181	-	-
	Lele28g0255	186	ProSitePatterns	EF-hand calcium-binding domain.	127	139	IPR018247	-
	Lele28g0255	186	FunFam	Calmodulin A	103	184	-	-
	Lele28g0255	186	SMART	efh_1	118	146	IPR002048	GO:0005509
	Lele28g0255	186	SMART	efh_1	156	184	IPR002048	GO:0005509
	Lele28g0255	186	SMART	efh_1	41	69	IPR002048	GO:0005509
	Lele28g0255	186	Gene3D	-	105	184	-	-
	Lele28g0255	186	ProSitePatterns	EF-hand calcium-binding domain.	165	177	IPR018247	-
	Lele28g0255	186	ProSiteProfiles	EF-hand calcium-binding domain profile.	152	186	IPR002048	GO:0005509
	Lele28g0255	186	CDD	EFh	118	181	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g0255	Lele-ChrLele28	1470020	1470756	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g0255	37	182	EF-hand Containing Proteins	AT1G21550	42.568	1.40e-35	120

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele02g0274	02	1554444	1569744	Lele28g0255	28	1470020	1470756	CCT
	Lele04g0281	04	1654502	1664999	Lele28g0255	28	1470020	1470756	CCT
	Lele25g0233	25	1363203	1363670	Lele28g0255	28	1470020	1470756	hybridization
	Lele26g0243	26	1413910	1414371	Lele28g0255	28	1470020	1470756	hybridization