Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0484 ATGGTCCCAGCTTCGCACAAAACGACGTCTCCTTCTTGCTGCGCCCATGTCAATTCAGCTCCAGTTTCACGACTCCCAGCGCCGTCCGCCGGAGCTGCCAATGCCTCCGGTGAGTGGATACACCGCGCTGATGATCCCCGAGTCAAGAAGATAGCCATGGAGACTCTGATCAACCCCGTTGATTCGCCTCCAGAACCTCCCACTAATGCTATTGCCACCAAAGGGCTCACTTTAATGCCAAGGGCACAGTCAAGACACCCTCTAGATCCTTTATCCGCCGCGGAGATCGTGGTGGCAGTGGCCACTGTCAGAGCAGCTGGAGCCACACCTGAGGTCAGAGATGCTATGCGCTTCTCTGAAGTTGTTCTGCTGGAACCAGACAAGCACGTGGTTGCACTAGCAGATACATATTACTTCCCTCCTTTTCAACCGTCCTTACTTCCTAAGACTAAAGGAGGGCCTAATTTTCCGATTAAGCTGCCTCCCAGATGTGCTAAACTCGTCGTTTGCAATAAGAAGTCAAACCAGACTAGTGTATGGATTGTTGAGCTATCTGAAGTACACGCAGTAACTCGAGGTGGTCATCACAGGGGAAAAGTAATTTCTTCGAAGGTTATTCCTGATGTTCAGCCTGCAATGGATGCTGTGGAGTATGCAGAATGTGAAGCTGTCGTGAAAGATTTTCCACCATTTATAGAGGCTATGAAGAGAAGGGGCATTGAAGACATGGACCTTGTAATGGTTGATGCCTGGTGTGCTGGTTATCATAGCCCAGATGATGCTCCCAGTCGAAGACTGGCTAAACCACTTATATTTTGTCGTAGTGAGAGTGATTGCCTAATGGAAAATGGCTATGCACGTCCAGTTGAGGGAATCTTTATGCGTGTTGATATGCAGAAGATGGAGGTGATTGAATTTGAAGACCGTAAACTTGTTCCTCTGCCTCCAGTTGATCCCTTGAGGAACTATACTGCAGGTGAAACAAGAAGTGGCTCTGATAGAAGTGATGTAAAACCCTTACATATCATTCAGCCTGAAGGTCCAAGCTTTCGAGTTAATGGTCGCTATGTAGAATGGCAGAAGTGGAATTTTCGAATTGGATTTACTCCCAGAGAAGGCCTGATTATACATTCTGTTGCTTACGTTGATGGTAGCCGAGGGCGAAGGCCAGTTGCACATAGGTTGAGTTTTGTGGAGATGGTTGTGCCGTATGGAGATCCAAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGTTGTGATTGTTTGGGGGTCATTAAATATTTTGATGCTCACTTCACAAATTTCACTGGAGGAGTTGAGACAATTGAAAATTGTGTTTGTTTGCATGAAGAGGATCATGGAATTCTATGGAAGCATCAAGACTGGAGAACTGGCTTTGCAGAAGTTCGAAGGTCAAGAAGGCTTTCGGATGGAAAAATTGAAGCTGAGGTCAAGCTAACGGGAATCCTCAGCTTAGGAGCGTTGATACCTGGAGAGTCTAGAAAATATGGTACCACGATTGCACCGGGCTTGTATGCTCCCGTCCACCAACACTTCTTTGTTGCTCGCATGGACATGGCCATTGATTCTAAACCTGGTGAAGCTTTCAATCAGGTTGTGGAGGTCAATGTCAGAGTTGAGAAGCCCGGGGAAGATAATGTTCACAATAATGCATTCTATGCGGAAGAGACTCTACTCAAATCTGAATTGGAAGCCATGAGGGATTGCAATCCTTTGACCTCCCGACATTGGATTGTGAGGAATACCAGAACAGGGAATAGAACGGGGCAATTAACAGGATACAAGCTAGTGCCTGGTTTAAACTGCTTACCGTTAGCAGGTCCTGAGGCCATGTTCTTAAGAAGAGCTGCTTTCTTGAAGCATAATCTCTGGGTGACGCCATATTCACGCGAGGAGATGTTTCCAGGAGGGGAATTCCCTAATCAAAACCCTCGTATAGGTGAAGGACTAGTTTCGTGGGTGAAGCAGAATCGATCGTTGGAAGAGGCTGATATAGTTCTATGGTACATATTTGGAATTACTCATGTGCCTCGACTAGAAGACTGGCCTGTTATGCCAGTAGAGCGGATTGGTTTTATGCTCATGCCTCATGGATTCTTCAATTGCTCGCCTGCAGTAGATGTGCCCCCTAATCCATGTGAGATGGACAATAAGGAGAATGAGAGCAAAGAAAACAAGCCCATCCAGAATGGATTAGTGTCTAAGCTTTAG 2280 0.4627 MVPASHKTTSPSCCAHVNSAPVSRLPAPSAGAANASGEWIHRADDPRVKKIAMETLINPVDSPPEPPTNAIATKGLTLMPRAQSRHPLDPLSAAEIVVAVATVRAAGATPEVRDAMRFSEVVLLEPDKHVVALADTYYFPPFQPSLLPKTKGGPNFPIKLPPRCAKLVVCNKKSNQTSVWIVELSEVHAVTRGGHHRGKVISSKVIPDVQPAMDAVEYAECEAVVKDFPPFIEAMKRRGIEDMDLVMVDAWCAGYHSPDDAPSRRLAKPLIFCRSESDCLMENGYARPVEGIFMRVDMQKMEVIEFEDRKLVPLPPVDPLRNYTAGETRSGSDRSDVKPLHIIQPEGPSFRVNGRYVEWQKWNFRIGFTPREGLIIHSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGVIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGFAEVRRSRRLSDGKIEAEVKLTGILSLGALIPGESRKYGTTIAPGLYAPVHQHFFVARMDMAIDSKPGEAFNQVVEVNVRVEKPGEDNVHNNAFYAEETLLKSELEAMRDCNPLTSRHWIVRNTRTGNRTGQLTGYKLVPGLNCLPLAGPEAMFLRRAAFLKHNLWVTPYSREEMFPGGEFPNQNPRIGEGLVSWVKQNRSLEEADIVLWYIFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPNPCEMDNKENESKENKPIQNGLVSKL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0484 759 Gene3D - 216 318 - -
Lele19g0484 759 Gene3D Copper amine oxidase, catalytic domain 326 733 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 PANTHER COPPER AMINE OXIDASE 81 744 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 SUPERFAMILY Amine oxidase N-terminal region 84 211 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 FunFam Amine oxidase 216 319 - -
Lele19g0484 759 Gene3D - 71 214 - -
Lele19g0484 759 FunFam Amine oxidase 70 213 - -
Lele19g0484 759 Pfam Copper amine oxidase, N2 domain 86 185 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 Pfam Copper amine oxidase, N3 domain 211 314 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 MobiDBLite consensus disorder prediction 735 759 - -
Lele19g0484 759 Pfam Copper amine oxidase, enzyme domain 493 728 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 Pfam Copper amine oxidase, enzyme domain 340 491 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 SUPERFAMILY Amine oxidase catalytic domain 334 733 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele19g0484 759 SUPERFAMILY Amine oxidase N-terminal region 210 326 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0484 Lele-ChrLele19 2729021 2733112 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1757 21 25331341 25335755 Lele19g0484 19 2729021 2733112 CCT
Lele22g1733 22 22678538 22684466 Lele19g0484 19 2729021 2733112 CCT
Lele23g0249 23 1720499 1725172 Lele19g0484 19 2729021 2733112 CCT
Lele24g1700 24 22339545 22344881 Lele19g0484 19 2729021 2733112 CCT
Lele19g0484 19 2729021 2733112 Lele21g1768 21 25399459 25402014 CCT
Lele19g0484 19 2729021 2733112 Lele22g1744 22 22758012 22760524 CCT
Lele19g0484 19 2729021 2733112 Lele23g0240 23 1643838 1646457 CCT
Lele19g0484 19 2729021 2733112 Lele24g1709 24 22410924 22413395 CCT
Lele17g1077 17 21258387 21262468 Lele19g0484 19 2729021 2733112 hybridization
Lele18g0464 18 2697927 2702888 Lele19g0484 19 2729021 2733112 hybridization