Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1077 ATGGTCCCAACTTCGCACAAAAAGACGTCTCCTTCTTGCTGCGCCCATGTCAATTCAGCTCCAGTTTCACGACTCCCAGCGCCGTCCGCCGGAGCTGCCAATGCCTCCGGTGAGTGGATACACCGCGCGGATGATCCCCGAGTCAAGAAGATAGCCATGGCGACTTTGATCAACCCCGTTGATTCGCCTCCAGAACCTCCCACTAATGCTATTGCCACCAAAGGGCTCACTTTAATGCCAAGGGCACAGTCAAGCCACCCTCTAGATCCTTTATCCGCCGCGGAGATCGTGGTGGCAGTGGCCACTGTCAGAGCAGCTGGAGCCACACCAGAGGTCAGAGATGCTATGCGCTTCTCTGAAGTTGTTCTGCTGGAACCAGACAAGCATGTGGTTGCACTAGCAGATGCATATTACTTCCCTCCTTTTCAACCGTCATTACTTCCTAAGAATAAAGGAGGGCCTAATTTTCCGATTAAACTGCCTCCCAGATGTGCTAAACTCGTCGTTTACAATAAGAAGTCAAACCAGACTAGTGTATGGATTGTTGAGCTATCTGAAGTACACGCAGTAACTCGAGGTGGTCATCACAGGGGAAAAGTAATTTCATCGCAGGTTATTCCTGATGTTCAGCCTGCAATGGATGCTGTGGAGTATGCAGAATGTGAAGCTGTCGTGAAAGACTTTCCACCATTTAGAGAGGCTATGAAGAGAAGGGGCATTGAAGACATGGACCTTGTAATGGTTGATGCCTGGTGTGCTGGTTATCATAGCCCAGATGATGCTCCCACTCGAAGACTGGCTAAACCACTTATATTTTGTCGTAGTGAGAGTGATTGCCTAATGGAAAATGGGTATGCACGTCCAGTTGAGGGCATCTTTATGCGTGTTGATATGCAGAAGATGGAGGTGATTGAATTTGAAGACCGTAAACTTGTTCCTCTGCCTCCAGTTGATCCCTTGAGGAACTATACTGCAGGTGAAACAAGAAGTGGCTCTGATAGAAGTGATGTAAAACCCTTACAAATCATGCAGCCTGAAGGTCCAAGCTTTCGAGTTAATGGTCGCTATGTAGAATGGCAGAAGTGGAATTTTCGAATTGGATTTACTCCCAGAGAAGGCCTGATTATACATTCTGTTGCTTACGTTGATGGTAGCCGAGGGCGAAGGCCTGTTGCACATAGGTTGAGTTTTGTGGAGATGGTTGTGCCGTATGGAGATCCAAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGTTGTGATTGTTTGGGCGTCATTAAATATTTTGATGCTCACTTCACAAATTTCACCGGAGGAGTTGAGACAATTGAAAATTGTGTTTGTTTGCATGAAGAGGATCATGGAATCCTATGGAAGCATCAAGACTGGAGAACTGGCTTTGCAGAAGTCCGAAGGTCAAGAAGGCTTTCGGTTTCTTTTATATGTACAGTGGCCAACTACGAGTATGGATTTTTCTGGCATTTTTATCAGGATGGAAAAATTGAAGCTGAGGTCAAGCTAACTGGAATCCTCAGCTTAGGAGCGTTGATACCTGGAGAGTCTAGAAAATATGGCACCACGATTGCACCGGGCTTGTATGCTCCCGTCCACCAACACTTCTTTGTTGCTCGCATGGACATGGCTATTGATTCTAAACCTGGTGAAGCTTTCAATCAGGTTGTGGAGGTCAATGTCAGAGTTGAGAAGCCCGGGGAAGATAATGTTCACAATAATGCATTCTATGCGGAAGAGACTCTACTAAAATCTGAATTGGAAGCCATGAGGGATTGCAATCCTTTGACCGCCCGACATTGGATTGTGAGGAATACCAGAACAGGGAATAGAATGGGGCAATTAACAGGATACAAGCTAGTGCCTGGTTCAAACTGCTCACCGTTAGCAGGTCCTGAGGCCATGTTCTTAAGAAGAGCTGCTTTCTTGAAGCATAATCTTTGGGTGACGCCATATTCACGCGAGGAGATGTTTCCAGGAGGGGAATTCCCTAATCAAAACCCTCGTATAGGTGAAGGACTAGTTTCGTGGGTGAAGCAGAATCGATCGTTGGAAGAGGCTGATATAGTTCTATGGTACATATTTGGAATTACTCATGTGCCTCGACTAGAAGACTGGCCTGTTATGCCAGTAGAGCGGATTGGTTTTATGCTCATGCCTCATGGATTCTTCAATTGCTCGCCTGCAGTAGATGTGCCCCCTAATCCATGTGAGATGGACAATAAGGAGAATGAGAGCAAAGAAAACAAGCCCATCCAGAGTGGATTAGCGTCGAAGCTTTAG 2340 0.4624 MVPTSHKKTSPSCCAHVNSAPVSRLPAPSAGAANASGEWIHRADDPRVKKIAMATLINPVDSPPEPPTNAIATKGLTLMPRAQSSHPLDPLSAAEIVVAVATVRAAGATPEVRDAMRFSEVVLLEPDKHVVALADAYYFPPFQPSLLPKNKGGPNFPIKLPPRCAKLVVYNKKSNQTSVWIVELSEVHAVTRGGHHRGKVISSQVIPDVQPAMDAVEYAECEAVVKDFPPFREAMKRRGIEDMDLVMVDAWCAGYHSPDDAPTRRLAKPLIFCRSESDCLMENGYARPVEGIFMRVDMQKMEVIEFEDRKLVPLPPVDPLRNYTAGETRSGSDRSDVKPLQIMQPEGPSFRVNGRYVEWQKWNFRIGFTPREGLIIHSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGVIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGFAEVRRSRRLSVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALIPGESRKYGTTIAPGLYAPVHQHFFVARMDMAIDSKPGEAFNQVVEVNVRVEKPGEDNVHNNAFYAEETLLKSELEAMRDCNPLTARHWIVRNTRTGNRMGQLTGYKLVPGSNCSPLAGPEAMFLRRAAFLKHNLWVTPYSREEMFPGGEFPNQNPRIGEGLVSWVKQNRSLEEADIVLWYIFGITHVPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPNPCEMDNKENESKENKPIQSGLASKL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1077 779 Gene3D Copper amine oxidase, catalytic domain 326 753 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 MobiDBLite consensus disorder prediction 754 779 - -
Lele17g1077 779 Pfam Copper amine oxidase, N2 domain 86 185 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 Gene3D - 216 318 - -
Lele17g1077 779 SUPERFAMILY Amine oxidase N-terminal region 84 211 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 Pfam Copper amine oxidase, enzyme domain 340 748 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 PANTHER COPPER AMINE OXIDASE 81 764 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 FunFam Amine oxidase 216 319 - -
Lele17g1077 779 FunFam Amine oxidase 330 755 - -
Lele17g1077 779 SUPERFAMILY Amine oxidase N-terminal region 210 326 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 FunFam Amine oxidase 70 213 - -
Lele17g1077 779 Pfam Copper amine oxidase, N3 domain 211 314 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Lele17g1077 779 Gene3D - 71 214 - -
Lele17g1077 779 SUPERFAMILY Amine oxidase catalytic domain 334 753 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1077 Lele-ChrLele17 21258387 21262468 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1757 21 25331341 25335755 Lele17g1077 17 21258387 21262468 CCT
Lele22g1733 22 22678538 22684466 Lele17g1077 17 21258387 21262468 CCT
Lele23g0249 23 1720499 1725172 Lele17g1077 17 21258387 21262468 CCT
Lele24g1700 24 22339545 22344881 Lele17g1077 17 21258387 21262468 CCT
Lele17g1077 17 21258387 21262468 Lele21g1768 21 25399459 25402014 CCT
Lele17g1077 17 21258387 21262468 Lele22g1744 22 22758012 22760524 CCT
Lele17g1077 17 21258387 21262468 Lele23g0240 23 1643838 1646457 CCT
Lele17g1077 17 21258387 21262468 Lele24g1709 24 22410924 22413395 CCT
Lele17g1077 17 21258387 21262468 Lele19g0484 19 2729021 2733112 hybridization
Lele17g1077 17 21258387 21262468 Lele20g0972 20 15797508 15802300 hybridization