Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1326 ATGGGTGCGAGTCGTAAACTTCAGGGTGAGATAGATCGTGTTCTGAAGAAGGTTCAAGAAGGCGTTGAAGTCTTCGATAGCATCTGGAAAAAGGTTTACGATACTGACAATGCGAACCAGAAGGAGAAATTTGAGGCGGACCTGAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGAGACCAGATCAAGACCTGGATTCAGTCTAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCCCTGGTGGATGCTCGCAAACTCATTGAGCGTGAAATGGAAAGATTTAAGATCTGTGAGAAGGAGACGAAGACCAAAGCTTTCTCCAAAGAAGGCTTGGGACAACAGCCCAAAACTGATCCTAAGGAGAAGGCTAAATCGGAGACTAGAGATTGGTTGAACAACGTGGTTGGAGAACTGGAATCTCAGATTGATAGCTTTGAAGCTGAGGTTGAAGGGCTTTCTGTCAAGAAAGGGAAGAATAGGCCACCTAGATTGACACATTTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTACTTTTGAGGCTACTTGATAATGATGAGTTAAGTGCTGAGCAGGTTAATGATGTCAGAGATTTCTTGGAAGACTATGTAGAGCGTAACCAGGAGGACTTTGATGAATTCAGTGATGTTGATGAGCTATACAGTTCATTACCTCTAGATAAGGTGGAGTCTCTTGAAGATCTTGTTACAATTGGTGCCCCTGGTGTTGCTAAGGGCACAACTGCTCTTGGCGTAAAGAATTCTGTGCTAGCATCAGCACTAGAATCATCATCAGCGTCTCAGACATCTGAGCAAGCTGATGATACAGCTTCCCAGGATAGCAATTCTGATATCGGTGCAAGAACTCCACCTTCTAAAAGTATCGGAATTAATTCTGCTACCTCATCACCAGCTGGGAACCATACAAGTCCTGTTTCTATGAATATTTTGGCTCATGACTTCTCCGGTGTGCTACCCATCGCATCAATCCTTCCTGGTTCAAATTCTGTTCGGAGTACCTTGGAGAATTCTAATGCTTCTAATTCTCCATCTTCTGTAAATCAGTCTAGCCCTGTAAAGGAAGAAGAAATTAATAGCTTCCCTGGACAGAGACCATCTCCATCACTTTCTGATGCTGCACTTGCAAGGGGCATTGGCAGAAACAGCCTGGCAAATCAAGCAACTTCTAGTATCCCTCTTGTTTCAGGAAACATTGTTTCCAGCAATGGGGCCCTTGGTTCAGTCCCTTCAGCATCTGAAATAACAAAGAGAAGCATATTGAGTGCTGATGGACTAGGAGGTGGTGGCATGGTGCAACCTCTTGTATCCCCCCTTAGTAACAGAACAATCTTGCCTCAGGCTGCAAAGGGTATTGATGGAACTGCCTCATTTGATTCTGTAAGTGTTAATGAGGCTGCAGCTGTCTCTGGGAGAGTTTTTTCTTCTTCTGTGGTTCCTGGTCTGCAATGGAGACCTGGAAGCCCCTTCCAGAACCAAAATGAGATGGGGCAGCTTCAAGGAAGGACTGAAATAGCTCCTGATCAAAGAGAGAAATTTTTGCAGAAGTTTCAGCAAGTCCAGCAACAAGGGCACAATACCCTTCTTGGGATGCCGTCTCTTGGTGGAGGGAATCAAAAGCAATTTTCTCCGCAGAATCAAAACCCTCTATTGCAGCAGTTTAGCTCCCAGGGCTCTTCTATTTCCTCTCAATCTGGTCTGGGCCTGGGAACCCAGGCACCAGGATTCATTAGTATTCCGTCTACATCACTACAGCTGACACCTAATTCGATCAATTCCTCATCTAACCAGCAGCAGTTGATTTCAGGTGTCTCTAAAGATGCTGATGTTGGCGATTATATGGATGAAGACCAACAGCAACAGCATAATTTTCCTGAAGAGCGTGCAACTGAATCTACTGCTAGTGCTGGGCTTGGCAAGAATCTTATAAACGAAGATGATTTGGGATCCACATATGTTGCATGTTCTCCCGCATTATCTGGCTCTCTCCCAACAGACCCTGCTAAGACCTCCAGAGATACTGACTTGTCTCTTGGACAAACTTTACTATCCAATCAACCAGCTGGTAACCTTGGTGTCATTGGGAGGAGAATTGGTGTTGACTTTGGAGCCATTGGTGATAACTTCAGTGGATCAAGTGTTAATTCTGGTGGATTGCGTGATCAGTTATATAATTTGCAGATGCTTGAGGCAGCTTATTACAAACTTCCACAACCTAAAGATTCGGAACGCCCAAGGACTTATGCTCCTAGGCATCCAACAATGACCCCTCCTAGTTATCCTCAAGTACAAGCATCCATCATTAATAATCCTGCCTTTTGGGAGAGAGTAGGGCTCGAACCGTATGGAACTGACACCTTGTTTTTTGCATTCTATTATCAGCAGAATACGTATCAACAATATCTGGCTGCAAAAGAGCTCAAGAAGCAGTCTTGGAGATATCACAGAAAATATAACATTTGGTTTCAGCGACATGATGAGCCCACAGTTGCTACAGATGAATATGAGCAAGGAACATACATATACTTTGATTTCCATATTGCAAACGATGACCTGCAACATGGGTGGTGTCAAAGAATTAAGACCGATTTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTACAATATAG 2679 0.4375 MGASRKLQGEIDRVLKKVQEGVEVFDSIWKKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAEVEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCELLLRLLDNDELSAEQVNDVRDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGAPGVAKGTTALGVKNSVLASALESSSASQTSEQADDTASQDSNSDIGARTPPSKSIGINSATSSPAGNHTSPVSMNILAHDFSGVLPIASILPGSNSVRSTLENSNASNSPSSVNQSSPVKEEEINSFPGQRPSPSLSDAALARGIGRNSLANQATSSIPLVSGNIVSSNGALGSVPSASEITKRSILSADGLGGGGMVQPLVSPLSNRTILPQAAKGIDGTASFDSVSVNEAAAVSGRVFSSSVVPGLQWRPGSPFQNQNEMGQLQGRTEIAPDQREKFLQKFQQVQQQGHNTLLGMPSLGGGNQKQFSPQNQNPLLQQFSSQGSSISSQSGLGLGTQAPGFISIPSTSLQLTPNSINSSSNQQQLISGVSKDADVGDYMDEDQQQQHNFPEERATESTASAGLGKNLINEDDLGSTYVACSPALSGSLPTDPAKTSRDTDLSLGQTLLSNQPAGNLGVIGRRIGVDFGAIGDNFSGSSVNSGGLRDQLYNLQMLEAAYYKLPQPKDSERPRTYAPRHPTMTPPSYPQVQASIINNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNIWFQRHDEPTVATDEYEQGTYIYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDELTI 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1326 892 Pfam NOT2 / NOT3 / NOT5 family 748 886 IPR007282 GO:0006355
Lele13g1326 892 Gene3D - 733 887 IPR038635 -
Lele13g1326 892 Coils Coil 139 159 - -
Lele13g1326 892 MobiDBLite consensus disorder prediction 272 316 - -
Lele13g1326 892 PIRSF NOT_su_3_5 1 892 IPR012270 GO:0006355|GO:0030015
Lele13g1326 892 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Lele13g1326 892 PANTHER CCR4 NOT-RELATED 24 889 IPR040168 GO:0030015
Lele13g1326 892 MobiDBLite consensus disorder prediction 550 582 - -
Lele13g1326 892 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 732 887 - -
Lele13g1326 892 MobiDBLite consensus disorder prediction 347 382 - -
Lele13g1326 892 MobiDBLite consensus disorder prediction 347 387 - -
Lele13g1326 892 Coils Coil 41 61 - -
Lele13g1326 892 MobiDBLite consensus disorder prediction 110 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1326 Lele-ChrLele13 23280813 23288994 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0494 06 3013234 3014957 Lele13g1326 13 23280813 23288994 CCT
Lele07g0706 07 4000122 4001799 Lele13g1326 13 23280813 23288994 CCT
Lele08g0504 08 3065839 3067562 Lele13g1326 13 23280813 23288994 CCT
Lele05g0675 05 3971701 3981846 Lele13g1326 13 23280813 23288994 CCT
Lele13g1326 13 23280813 23288994 Lele05g0680 05 4014082 4015574 CCT
Lele13g1326 13 23280813 23288994 Lele06g0505 06 3065920 3069302 CCT
Lele13g1326 13 23280813 23288994 Lele07g0715 07 4052224 4055786 CCT
Lele13g1326 13 23280813 23288994 Lele08g0512 08 3118918 3121528 CCT
Lele13g1326 13 23280813 23288994 Lele15g1117 15 6470472 6477373 hybridization
Lele13g1326 13 23280813 23288994 Lele16g1149 16 6435652 6439255 hybridization