Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g0675 ATGGGCGCAAGTCGAAAGCTTCAGGGCGAGATAGATCGCGTTCTCAAGAAGGTCCAAGAAGGTGTCGAGGTCTTCGATAGTATCTGGAACAAGGTTTACGATACAGACAATGCTAACCAGAAGGAGAAATTTGAGGCAGACCTGAAGAAAGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATACAGTCTAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCTCTGGTGGATGCTCGCAAGGTCATCGAGCGTGAAATGGAAAGATTTAAGATCTGTGAAAAGGAAACTAAGACCAAAGCGTTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCAAAGGAGAAGGCTAAATCAGAGACGAGGGATTGGTTGAATAATGTGGTCGGAGAATTAGACTCTCAAATTGATAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAAAAGGGAAAAAGCAGACCACCTAGATTGACACATCTAGAGATGTCAATTGCTCGACACAAGGCTCATGTAAAAAAATGTGAGTTACTCTTGAGGCTGCTAGACAACGATGAACTAAGTCCTGAGCAGGTTAATGATGTCAAAGATTTCTTGGAAGACTATGTGGAGCGTAATCAGGAGGACTTTGATGAATTCAGTGATGTCGATGAGCTATACAGTTCATTACCTTTGGACAAGGTGGAGTCTCTCGAAGACCTTGTCACAATTGGCCCACCTGCTCTTGCTAAGGGTGCACTTGGTCTTAGCTTGAAGACATCTTTAGCTGCATCGGCTTCGCAAACATCTGAACAACCTGAAGACACTGCTTCCCAGGATAGCAATTCTGATACTGTTGTCAGAACTCCACCTTCTAAAAGTAGTGGAATCAGTTCTGCTATGTCGACACCAGCAGGGAACCATGCTACTCCTGTTTCTTTGAATGTTTCATCTCAGAACTTGTCTGGTGCAACTGCTGCAGCATCGATCCTCCCTGGTTCAAATTCTGTTCGGACTGCTCTGGAGAATACTGGTGCTACTAATCCTTCATCTGTAAATCCGCCTACCTCTGTGAAAGAAGATGAGGTTAATGGCTTCCCTGGCCGGAGAGCATCTCCACCACTTTCTGATGCTGCACATGCGAGAGGCATCAGTAGAAACAGCCTACCAAATCAAGTGACATCTGGTATCCCTCTTGCTTCCAGCAACATTGTTTCCAGCAATGGGGCCCTTGGTTCGGTCCCTTCAGCCTCTGATATAACGAAGAGGAACTTACTGGGAGTCGATGACAGGCTTGGAAGTAGTGGAATAGGGCAGCCTCTTGTATCACCCCTAAGCAATAGAATGATGTTGCCTCAGGCTGTGAAGGCTAACGATGGAACTGGTTCAGTTGACCCTAATAATGTTAATGAGGCTGCAGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGGTGTTCATGGCATGCAGTGGAGACCAGGAAGTCCTTTCCAGAACCAGAATGAGACGGGTCAGCTTCGTGGAAGAACTGAAATAGCACCTGATCAGAGAGAAAAGTTTCTGCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCATAGTACCCTTCTTGGTATGCCTTCTCTTGCTGGTGGAAGTCATAAGCAGTTTTCTGCTCAGCAGCAAAATCCTCTGTTGCAGCAGGCATCAGGTCTCAGTAGCATTTCATCCACCTCATTACAGCAGCCATCCAATTCTATCCTTTCTTCATCTAGTCAACAGCCAATGATCTCAAGTGTTTCTCAAGATTCTGATGGCAATTCTAAAGTTGAAGAACATCAGCAACAACAGCATACTCCTGATGATTCAGTGTCTGAATCTACTGCCAGTAATGGGCTTGGCAAGAATCTTCTGAATGAAGAGGATTTAAAATCCACATATGCTGTAGATTCTCCTCAGGCAGGAGTGTCTGGTTCTCTTACCGAGCCTGCTCAGAGCTCCAGAGATGCTGATTTTTCTCCTGGCCAACCTTTGCAGTCCAATCAACCTTCTGGCAACCTTGGTGTTATTGGAAGAAGAAGTTTCGCTGATTTTGGAGCCATTGGTGATAATCTTAGTGGTACAAACGTCAATTCTGGCGGAGGGCGTGACCATTTATTTAATTTACAGATGCTTGAATCGGCTTACTACAAACTTCCACAACCCAAAGACTCAGAACGTCCAAGGACTTATACTCCTAAGCACCCAGCAATAACACCTCCAAGTTATCCTCAAGTACAGGCCCCCATTGTCAGTAATCCTGCCTTTTGGGAGAGAGTAGGCCTTGAACCATATGGCACTGACACCCTGTTCTTTGCATTTTATTATCAACAGAACACTTATCAACAATATTTGGCTGCAAAAGAACTAAAGAAGCAGTCTTGGAGATATCACAGAAAATATAACACATGGTTTCAGAGACATGAAGAGCCAAAAGTCGCTACAGATGAATTTGAGCAGGGAACATATGTATACTTCGATTTTCATATTGCAAACGATGACCTGCAACATGGATGGTGTCAACGAATCAAGACCGAGTTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTAGTGTATAG 2604 0.4455 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKVIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELDSQIDNFEAELEGLSVKKGKSRPPRLTHLEMSIARHKAHVKKCELLLRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPALAKGALGLSLKTSLAASASQTSEQPEDTASQDSNSDTVVRTPPSKSSGISSAMSTPAGNHATPVSLNVSSQNLSGATAAASILPGSNSVRTALENTGATNPSSVNPPTSVKEDEVNGFPGRRASPPLSDAAHARGISRNSLPNQVTSGIPLASSNIVSSNGALGSVPSASDITKRNLLGVDDRLGSSGIGQPLVSPLSNRMMLPQAVKANDGTGSVDPNNVNEAAAVSGRVFSPSGVHGMQWRPGSPFQNQNETGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLAGGSHKQFSAQQQNPLLQQASGLSSISSTSLQQPSNSILSSSSQQPMISSVSQDSDGNSKVEEHQQQQHTPDDSVSESTASNGLGKNLLNEEDLKSTYAVDSPQAGVSGSLTEPAQSSRDADFSPGQPLQSNQPSGNLGVIGRRSFADFGAIGDNLSGTNVNSGGGRDHLFNLQMLESAYYKLPQPKDSERPRTYTPKHPAITPPSYPQVQAPIVSNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELSV 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g0675 867 Coils Coil 139 159 - -
Lele05g0675 867 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 707 862 - -
Lele05g0675 867 PANTHER CCR4 NOT-RELATED 24 864 IPR040168 GO:0030015
Lele05g0675 867 Pfam NOT2 / NOT3 / NOT5 family 722 861 IPR007282 GO:0006355
Lele05g0675 867 MobiDBLite consensus disorder prediction 644 682 - -
Lele05g0675 867 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Lele05g0675 867 MobiDBLite consensus disorder prediction 614 628 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 568 628 - -
Lele05g0675 867 Gene3D - 709 862 IPR038635 -
Lele05g0675 867 MobiDBLite consensus disorder prediction 268 317 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 343 361 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 568 599 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 343 383 - -
Lele05g0675 867 PIRSF NOT_su_3_5 1 867 IPR012270 GO:0006355|GO:0030015
Lele05g0675 867 Coils Coil 41 61 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 641 683 - -
Lele05g0675 867 MobiDBLite consensus disorder prediction 110 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g0675 Lele-ChrLele05 3971701 3981846 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0675 05 3971701 3981846 Lele13g1326 13 23280813 23288994 CCT
Lele05g0675 05 3971701 3981846 Lele15g1117 15 6470472 6477373 CCT
Lele05g0675 05 3971701 3981846 Lele16g1149 16 6435652 6439255 CCT
Lele05g0675 05 3971701 3981846 Lele05g0675 05 3971701 3981846 ECH
Lele05g0675 05 3971701 3981846 Lele07g0710 07 4016219 4024621 hybridization
Lele05g0675 05 3971701 3981846 Lele08g0507 08 3081512 3091200 hybridization