Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1514 ATGGGGAAGATTCTCCGAGAAACCTCGAAGCCATCTTCCAATTCTTCATCCCCATCTTCGTCTTTGCCACCTGCAACAACCTCATCGACATCGATCACCGATACTATAAGGGGTTCTCATCAGTTCAAGATCACGGGTTATTCGTTGTCAAAAGGAATTGGGATTGGGAAATACATCGCATCTGACTCGTTTTCGGTCGGTGGGTATGAGTGGTCCATCTACTTTTATCCGGATGGGAAGAGCGTCGAAGACAATGCTACTTACGTATCGCTGTTTATCGCGCTTGCCAGTGAAGGCACAGACGTTAGGGCTCTTTTTGAGTTGACCCTTTTAGATCAGAGTGGGAAAGAGAGGCATAAGGTACATAGTCATTTTGAGAGAACGCTCGAAAGTGGGCCGTACACCTTAAAATACCGTGGTAGCATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCTCTTGAGACGTCAGACTACCTTAAAGATGATTGCCTCTGTGTTAACTGTAGTGTTGGTGTTGTGAGGTCACACACGGAGGGCCCCAAGATCTACTCCATAGCAATAGCACCTTCTAACATTGGACACCAATTTGGGCAGCTACTGGAACATGGAAAAGGAAGTGATGTGAGTTTTGAAGTTAATGGAGAAGTCTTTGCTGCTCATAAATTGGTACTAGCAGCTCGTTCACCTGTATTCAGAGCCCAACTTTTTGGTCCTATGAAGGATCAAAATACTCAGTGTATAAAAGTTGAGGACATGGAGGCTCCAGTTTTTAAGGCATTACTTCATTTCATATACTGGGACGCACTTCCTGACCTGCAAGAGCTTACTGGCTTGAACTCAAAATGGGCAACCACATTGATGTCTCAGCATCTGCTGGCTGCTGCTGATCGGTATGGTTTAGAGAGGCTTAGACTGATGTGTGAAGCCAGCCTCTGTGAGGATGTTGCAATAAACACTGTGGCTACAACTCTAGCTTTGGCTGAGCATCACCATTGTTTCCAGCTGAAAGCAGTCTGTCTCAAATTCATTGCAATGCCTGAAAATCTCAGAGCTGTGATGCAAACGGACGGTTTTGAATACTTAAAGGAAAGTTGCCCATCTGTTCTGACCGAGCTATTGGAGTACGTGGCTAGATTTACTGAGCATTCAGACTTCATGAGCAAGCATAGGAGTGAAGCAATTCTTGATGGCAGCGACATAAATGGTCGACGGTTGTTCTTCTCCTATTTCAAGGACTTGGTGGGCAGAGAGGTAACGGTGGAGCTCAAGAACGATTTGGCTATTCGAGGAACATTGCACTCAGTGGACCAATACCTTAACATCAAGCTCGAGAACACTCGCGTCGTCGATCAAGACAAATACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGGGGGTCGGTGGTAAGATATGTGCAGTTGCCTCCGGAAGGAGTGGATGTTGAACTTTTGCATGATGCCACAAGGAGAGAAGCTCGCGGTGGTTGA 1494 0.4598 MGKILRETSKPSSNSSSPSSSLPPATTSSTSITDTIRGSHQFKITGYSLSKGIGIGKYIASDSFSVGGYEWSIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLCVNCSVGVVRSHTEGPKIYSIAIAPSNIGHQFGQLLEHGKGSDVSFEVNGEVFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDALPDLQELTGLNSKWATTLMSQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEHHHCFQLKAVCLKFIAMPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMSKHRSEAILDGSDINGRRLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1514 497 CDD BTB_POZ_BPM_plant 193 313 - -
Lele05g1514 497 SUPERFAMILY POZ domain 184 314 IPR011333 -
Lele05g1514 497 Pfam MATH domain 56 171 IPR002083 GO:0005515
Lele05g1514 497 Pfam LSM domain 411 475 IPR001163 -
Lele05g1514 497 CDD MATH 38 171 IPR002083 GO:0005515
Lele05g1514 497 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Lele05g1514 497 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Lele05g1514 497 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 374 IPR045005 GO:0016567
Lele05g1514 497 SUPERFAMILY TRAF domain-like 35 173 - -
Lele05g1514 497 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Lele05g1514 497 FunFam BTB-POZ and math domain 1 183 310 - -
Lele05g1514 497 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Lele05g1514 497 FunFam U6 snRNA-associated Sm-like protein LSm2 405 497 - -
Lele05g1514 497 SMART Sm3 409 476 IPR001163 -
Lele05g1514 497 MobiDBLite consensus disorder prediction 1 32 - -
Lele05g1514 497 SUPERFAMILY Sm-like ribonucleoproteins 407 495 IPR010920 -
Lele05g1514 497 MobiDBLite consensus disorder prediction 7 32 - -
Lele05g1514 497 SMART math_3 42 154 IPR002083 GO:0005515
Lele05g1514 497 FunFam BTB-POZ and math domain 1 316 393 - -
Lele05g1514 497 Gene3D - 316 392 - -
Lele05g1514 497 SMART BTB_4 207 316 IPR000210 GO:0005515
Lele05g1514 497 CDD LSm2 406 494 IPR016654 GO:0006397
Lele05g1514 497 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Lele05g1514 497 CDD BACK_AtBPM-like 313 376 IPR034090 -
Lele05g1514 497 Gene3D - 401 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1514 Lele-ChrLele05 9710722 9724345 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1514 05 9710722 9724345 Lele13g2012 13 27413902 27417204 CCT
Lele05g1514 05 9710722 9724345 Lele14g1944 14 25738264 25741709 CCT
Lele05g1514 05 9710722 9724345 Lele15g0393 15 2269534 2273954 CCT
Lele05g1514 05 9710722 9724345 Lele16g0416 16 2254256 2257712 CCT
Lele13g2019 13 27450005 27467618 Lele05g1514 05 9710722 9724345 CCT
Lele14g1952 14 25800923 25814845 Lele05g1514 05 9710722 9724345 CCT
Lele15g0387 15 2214330 2230490 Lele05g1514 05 9710722 9724345 CCT
Lele05g1514 05 9710722 9724345 Lele05g1514 05 9710722 9724345 ECH
Lele05g1514 05 9710722 9724345 Lele07g1574 07 9726491 9730826 hybridization
Lele05g1514 05 9710722 9724345 Lele08g1364 08 8744006 8748094 hybridization