Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0393 ATGATGGGCAGAATCTGGAGCGGTAACCTTATTACCCGACTGATTAATACAGCGCCGGAGGTTAAGAATAGGATCAAGGTTCTCCGAGAAACGTCTAGGCCATCCTCAAATTCTTCATCCCCATTCCCATCTTCGGCACCTGCAACCACCTCATCGTCATCGATAACCGATACTGTAAGGGGTTCTCACCAGTTCAAGATCTCGGGATATTCCTTATCAAAGGGGATCGGGATCGGCAAATATATAGCATCTGGCACGTTTTCAGTCGGTGGGTATGAGTGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTCGAGGACAATGCTATTTATGTATCACTATTTATCGCGCTTGCCAGTGAGGGGACGGACGTTAGGGCGCTTTTTGAGCTAACCCTTTTGGACCAGAGCGGGAAGGAGAGACATAAGGTTAATAGTCATTTTGAGAGGACGCTGGAAAGCGGGCCTTACACGTTAAAATACCGTGGCAGCATGTGGGGTTACAAGCGATTTTTCAAGAGAACAGTTCTGGAGACATCAGATTACCTTAAAGATGATTGCCTCTGTGTTACTTGCAGCGTTGGGGTTGTGAGGTCATACACAGAGGGCCCTAAAATCTACTCCATACCTATGCCGCAATCTGACATAGGCCAGCAATTTGGGCGGCTACTTGAAAGTGAAAAAGGAAGTGATGTGAACTTTGAAGTTGGTGGTGAAATTTTTGGTGCTCATAAATTGATATTAGCAGCTCGTTCTCCTGTTTTCAGAGCCCAACTTTTTGGTCCTATGAAAGATCAGGACACTCGTTGTATAAAAGTTGAAGACATGGAGGCACCAGTTTTTAAGGCATTGCTTCATTTTATATACTGGGACTCGCTGCCTGATATGCAAGAGCTTACAGGGTTGAACTCGAAATGGGCAACAACCTTAATGGCTCAACATCTGCTAGCAGCAGCAGATCGGTATGGCTTAGAGAGGCTTAGGTTGATGTGTGAAGCCAATCTTTGTAAAGATGTTGCAATAAATACTGTGGCTACAACTTTAGCCTTGGCGGAGCAGCATCATTGTTTCCAGCTCAAAGCAGTCTGTCTCAAATTTGTTGCGACACCTGAAAATCTTAGAGCTGTGATGCAGACTGATGGTTTTGAGTACCTGAAGGAAAGTTGTCCACCTGTTCTGACTGAGCTTTTAGAGTACGTGGCTAAATTTACTGAGCATTCGGACTTCATGTGCAAGGATAGGAATGAAGCAATACTTGATGGCAGCGACATAAATGGTAGACGGGTGAAGCAAAGGCTCTAG 1302 0.4547 MMGRIWSGNLITRLINTAPEVKNRIKVLRETSRPSSNSSSPFPSSAPATTSSSSITDTVRGSHQFKISGYSLSKGIGIGKYIASGTFSVGGYEWAIYFYPDGKSVEDNAIYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTVLETSDYLKDDCLCVTCSVGVVRSYTEGPKIYSIPMPQSDIGQQFGRLLESEKGSDVNFEVGGEIFGAHKLILAARSPVFRAQLFGPMKDQDTRCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLERLRLMCEANLCKDVAINTVATTLALAEQHHCFQLKAVCLKFVATPENLRAVMQTDGFEYLKESCPPVLTELLEYVAKFTEHSDFMCKDRNEAILDGSDINGRRVKQRL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0393 433 SUPERFAMILY TRAF domain-like 57 196 - -
Lele15g0393 433 Gene3D Potassium Channel Kv1.1; Chain A 206 333 IPR011333 -
Lele15g0393 433 ProSiteProfiles MATH/TRAF domain profile. 60 194 IPR002083 GO:0005515
Lele15g0393 433 ProSiteProfiles BTB domain profile. 230 289 IPR000210 GO:0005515
Lele15g0393 433 SMART math_3 65 177 IPR002083 GO:0005515
Lele15g0393 433 CDD MATH 61 194 IPR002083 GO:0005515
Lele15g0393 433 MobiDBLite consensus disorder prediction 30 57 - -
Lele15g0393 433 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 198 IPR008974 GO:0005515
Lele15g0393 433 MobiDBLite consensus disorder prediction 29 57 - -
Lele15g0393 433 CDD BACK_AtBPM-like 336 399 IPR034090 -
Lele15g0393 433 CDD BTB_POZ_BPM_plant 216 336 - -
Lele15g0393 433 Pfam BTB/POZ domain 221 337 IPR000210 GO:0005515
Lele15g0393 433 FunFam BTB-POZ and math domain 1 206 333 - -
Lele15g0393 433 SMART BTB_4 230 339 IPR000210 GO:0005515
Lele15g0393 433 Gene3D - 339 414 - -
Lele15g0393 433 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 50 397 IPR045005 GO:0016567
Lele15g0393 433 SUPERFAMILY POZ domain 207 337 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0393 Lele-ChrLele15 2269534 2273954 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1368 06 8801806 8807153 Lele15g0393 15 2269534 2273954 CCT
Lele07g1575 07 9737958 9741200 Lele15g0393 15 2269534 2273954 CCT
Lele05g1514 05 9710722 9724345 Lele15g0393 15 2269534 2273954 CCT
Lele15g0393 15 2269534 2273954 Lele15g0393 15 2269534 2273954 ECH
Lele13g2012 13 27413902 27417204 Lele15g0393 15 2269534 2273954 hybridization
Lele14g1944 14 25738264 25741709 Lele15g0393 15 2269534 2273954 hybridization