Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1574 ATGGGGAAGATTCTCCGAGAAACCTCGAAGCCATCTTCCAATTCTTCATCCCCATCTTCGTCTTCGCCACCTGCAACAACCTCATCGACATCGATGACCGATACTATAAGGGGTTCTCATCAGTTCAAGATCACGGGTTATTCGTTGTCAAAAGGAATTGGGATTGGGAAATACATCGCATCTGACACGTTTTCGGTCGGTGGGTATGAGTGGGCCATCTACTTTTATCCGGATGGGAAGAGCGTCGAAGACAATGCTACTTACGTATCGCTGTTTATCGCGCTTGCCAGTGAAGGCACAGACGTTAGGGCTCTTTTTGAGTTGACCCTTTTAGATCAGAGTGGGAAAGAGAGGCATAAGGATCCTGATGCTATTTTTTCTGATCATACTTTGAATTCTTTGCGTTATAACATGACTGGAAGCCATGAACCAAGGGGTTACAAGCGGTTTTTTAAGAGAACAGCTCTTGAGACGTCAGACTACCTTAAAGATGATTGCCTCTGTGTTAACTGTAGTGTTGGTGTTGTGAGGTCACACACGGAGGGCCCCAAGATCTACTCCATAGCAATAGCACCTTCCAACATTGGACACCAATTTGGGCAGCTACTGGAACATGGAAAAGGAAGTGATGTGAGTTTTGAAGTTAATGGAGAAGTCTTTGCTGCTCATAAATTGGTACTAGCAGCTCGTTCACCTGTATTCAGAGCCCAACTTTTTGGTCCTATGAAGGATCAAAGTACTCAGTGTATAAAAGTTGAGGACATGGAGGCTCCAGTTTTTAAGCTGAAAGCAGTCTGTCTCAAATTCATTGCAATGCCTGAAAATCTCAGAGTAGTTGATGTGGTAGCCTATCTGGTTGCAACTGGATATGGCCCCGGCATTGGCAGTCTTTTGGGATGTAATAAACGCTATTCTCTTCTGAACCACAAAAGATTGTTGGTTGCTGAATTCATTACAAGAATGATTTTTGTTTATAAGCTTGCTGTGATGCAAACGGACGGTTTTGAATACTTAAAGGAAAGTTGCCCATCTGTGCTGACCGAGCTATTGGAGTACGTGGCTAGATTTACTGAGCATTCAGACTTCATGAGCAAGCATAGGAGTGAAGCAATTCTTGATGGCAGCGACATAAATGGTCGACGGGTGAAGCAAAGACTAGTATGA 1164 0.439 MGKILRETSKPSSNSSSPSSSSPPATTSSTSMTDTIRGSHQFKITGYSLSKGIGIGKYIASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKDPDAIFSDHTLNSLRYNMTGSHEPRGYKRFFKRTALETSDYLKDDCLCVNCSVGVVRSHTEGPKIYSIAIAPSNIGHQFGQLLEHGKGSDVSFEVNGEVFAAHKLVLAARSPVFRAQLFGPMKDQSTQCIKVEDMEAPVFKLKAVCLKFIAMPENLRVVDVVAYLVATGYGPGIGSLLGCNKRYSLLNHKRLLVAEFITRMIFVYKLAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMSKHRSEAILDGSDINGRRVKQRLV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1574 387 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 177 IPR008974 GO:0005515
Lele07g1574 387 SUPERFAMILY TRAF domain-like 34 180 - -
Lele07g1574 387 SMART math_3 42 156 IPR002083 GO:0005515
Lele07g1574 387 ProSiteProfiles MATH/TRAF domain profile. 37 173 IPR002083 GO:0005515
Lele07g1574 387 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 26 348 IPR045005 GO:0016567
Lele07g1574 387 MobiDBLite consensus disorder prediction 7 34 - -
Lele07g1574 387 ProSiteProfiles BTB domain profile. 209 261 IPR000210 GO:0005515
Lele07g1574 387 MobiDBLite consensus disorder prediction 1 34 - -
Lele07g1574 387 CDD MATH 38 173 IPR002083 GO:0005515
Lele07g1574 387 Gene3D - 310 369 - -
Lele07g1574 387 Pfam BTB/POZ domain 200 261 IPR000210 GO:0005515
Lele07g1574 387 Gene3D Potassium Channel Kv1.1; Chain A 185 279 IPR011333 -
Lele07g1574 387 SUPERFAMILY POZ domain 186 262 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1574 Lele-ChrLele07 9726491 9730826 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2019 13 27450005 27467618 Lele07g1574 07 9726491 9730826 CCT
Lele14g1952 14 25800923 25814845 Lele07g1574 07 9726491 9730826 CCT
Lele15g0387 15 2214330 2230490 Lele07g1574 07 9726491 9730826 CCT
Lele07g1574 07 9726491 9730826 Lele07g1574 07 9726491 9730826 ECH
Lele05g1514 05 9710722 9724345 Lele07g1574 07 9726491 9730826 hybridization
Lele06g1367 06 8789522 8798634 Lele07g1574 07 9726491 9730826 hybridization