Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2012 ATGGGTAGGGTTCTCCGAGAAACGTCTAGGCCACCCTCAAATTCTTCATCCCCATTCCCATCTTCGGCACCTGCAACCACCTCATCGTCTTCGATAACCGATACTGTAAGGGGTTCTCACCAGTTCAAGATCTCGGGATATTCCTTATCAAAGGGGATCGGGATCGGCAAATATATAGCATCTGGCACGTTTTCAGTCGGTGGGTATGAGTGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTCGAGGACAATGCTACTTACGTATCACTATTTATCGCGCTTGCCAGTGAGGGGACGGACGTTAGGGCGCTTTTTGAGCTAACCCTTTTGGACCAGAGCGGGAAGGAGAGACATAAGGTTAATAGTCATTTTGAGAGGACGCTGGAAAGCGGGCCTTACACGTTAAAATACCGTGGCAGTATGTGGGGTTACAAGCGATTTTTCAAGAGAACAGGTCTGGAGACATCAGATTACCTTAAAGATGATTGCCTCTGTGTTACTTGCAGCGTTGGGGTTGTGAGGTCATACACAGAGGGCCCTAAAATCTACTCCATACCTATACCGCAATCTGACATAGGCCAGCAATTTGGGCGGCTTCTTGAAAGTGAAAAAGGAAGTGATGTGAACTTTGAAGTTGGTGGTGAAATTTTTTGTGCTCATAAATTGATATTAGCAGCTCGTTCTCCTGTTTTCAGAGCCCAACTTTTTGGACCTATGAAAGATCAGGACACTCATTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATTTTATATACTGGGACTCGCTGCCTGATATGCAAGAGCTTACAGGGTTGAACTCGAAATGGGCAACAACCTTAATGGCTCAACATCTGCTAGCAGCAGCAGATCGTTATGGCTTAGAGAGGCTTAGGTTGATGTGTGAAGCCAATCTTTGTGAAGATGTTGCGATAAATACTGTGGCTACAACTTTAGCCTTGGCGGAGCAGCATCATTGTTTCCAGCTCAAAGCAGTCTGTCTCAAATTTATTGCTACACCTGAAAATCTTAGAGCTGTGATGCAGACTGATGGTTTTGAGTACCTGAAGGAAAGTTGCCCACCTGTTCTGACTGAGCTCTTGGAGTACGTGGCTAAATTTACTGAGCATTCGGACTTCATGTGCAAGGATAGGAATGAAGCAATACTTGATGGCAGCGACATAAATGGTAGACGGGTGAAGCAAAGGCTCTAG 1233 0.4574 MGRVLRETSRPPSNSSSPFPSSAPATTSSSSITDTVRGSHQFKISGYSLSKGIGIGKYIASGTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTGLETSDYLKDDCLCVTCSVGVVRSYTEGPKIYSIPIPQSDIGQQFGRLLESEKGSDVNFEVGGEIFCAHKLILAARSPVFRAQLFGPMKDQDTHCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLERLRLMCEANLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATPENLRAVMQTDGFEYLKESCPPVLTELLEYVAKFTEHSDFMCKDRNEAILDGSDINGRRVKQRL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2012 410 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Lele13g2012 410 MobiDBLite consensus disorder prediction 8 34 - -
Lele13g2012 410 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Lele13g2012 410 CDD BTB_POZ_BPM_plant 193 313 - -
Lele13g2012 410 SUPERFAMILY TRAF domain-like 34 173 - -
Lele13g2012 410 FunFam BTB-POZ and math domain 1 183 310 - -
Lele13g2012 410 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Lele13g2012 410 SUPERFAMILY POZ domain 184 314 IPR011333 -
Lele13g2012 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 374 IPR045005 GO:0016567
Lele13g2012 410 CDD MATH 38 171 IPR002083 GO:0005515
Lele13g2012 410 Gene3D - 316 392 - -
Lele13g2012 410 SMART BTB_4 207 316 IPR000210 GO:0005515
Lele13g2012 410 MobiDBLite consensus disorder prediction 1 34 - -
Lele13g2012 410 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Lele13g2012 410 SMART math_3 42 154 IPR002083 GO:0005515
Lele13g2012 410 CDD BACK_AtBPM-like 313 376 IPR034090 -
Lele13g2012 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2012 Lele-ChrLele13 27413902 27417204 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1368 06 8801806 8807153 Lele13g2012 13 27413902 27417204 CCT
Lele07g1575 07 9737958 9741200 Lele13g2012 13 27413902 27417204 CCT
Lele05g1514 05 9710722 9724345 Lele13g2012 13 27413902 27417204 CCT
Lele13g2012 13 27413902 27417204 Lele13g2012 13 27413902 27417204 ECH
Lele13g2012 13 27413902 27417204 Lele15g0393 15 2269534 2273954 hybridization
Lele13g2012 13 27413902 27417204 Lele16g0416 16 2254256 2257712 hybridization