Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1944 ATGGGTAGGGTTCTCCGAGAAACGTCTAGGCCATCCTCAAATTCTTCATCCCCATCCCCATCTTCGGCACCTGCAACCACCTCTTCATCATCTATAACCGATACTGTAAGGGGTTCTCACCAGTTTAAGATCTCGGGGTATTCCTTATCAAAAGGGATTGGGATCGGCAAATATATAGCATCTGACACGTTTTCAGTCGGTGGGTATGAGTGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTCGAGGACAATGCTACTTACGTATCACTATTTATAGCGCTTGCCAGTGAGGGGACGGACGTTAGGGCGCTTTTTGAGCTAACCCTTTTGGACCAGAGCGGGAAGGAGAGACATAAGGTTAATAGTCATTTTGAGAGGACGCTGGAAAGCGGGCCTTACACGTTAAAATACCGTGGCAGCATGTGGGGTTACAAGCGATTTTTCAAGAGAACAGTTCTGGAGACATCAGATTACCTTAAAGATGATTGCCTCTGTGTTACTTGCAGCGTTGGGGTTGTGAGGTCATACACAGAGGGCCCTAAAATCTACTCCATACCTATACCGCAATCTGACATAGGCCAGCAGTTTGGGCGGCTACTTGAAAGTGAACAAGGAAGTGATGTGAACTTTGAAGTTGATGGTGAAATTTTTTCTGCTCATAAATTGGTATTAGCAGCTCGTTCTCCTGTTTTCAGAGCCCAACTTTTTGGTCCTATGAAAGATCTGGACACTCGTTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTTAAGCTCAAAGCAGTCTGTCTCAAATTTATTGCGACGCCTGAAAATCTCAGAGCTGTGATGCAGACTGATGGTTTTGAGTACCTGAAGGAAAGTTGTCCACCTGTTCTGACTGAGCTCTTGGAGTACGTGGCTAGATTTACTGAACATTCTGACTTCATGTGCAAGGATAGGACTGAAGCAATACTTGATGGCAGCGACATAAATGGTAGACGGGTGAAGCAAAGGCTCTAG 1005 0.4567 MGRVLRETSRPSSNSSSPSPSSAPATTSSSSITDTVRGSHQFKISGYSLSKGIGIGKYIASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTVLETSDYLKDDCLCVTCSVGVVRSYTEGPKIYSIPIPQSDIGQQFGRLLESEQGSDVNFEVDGEIFSAHKLVLAARSPVFRAQLFGPMKDLDTRCIKVEDMEAPVFKLKAVCLKFIATPENLRAVMQTDGFEYLKESCPPVLTELLEYVARFTEHSDFMCKDRTEAILDGSDINGRRVKQRL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1944 334 SMART math_3 42 154 IPR002083 GO:0005515
Lele14g1944 334 CDD MATH 38 171 IPR002083 GO:0005515
Lele14g1944 334 SUPERFAMILY POZ domain 184 260 IPR011333 -
Lele14g1944 334 Pfam BTB/POZ domain 198 259 IPR000210 GO:0005515
Lele14g1944 334 MobiDBLite consensus disorder prediction 7 34 - -
Lele14g1944 334 MobiDBLite consensus disorder prediction 1 34 - -
Lele14g1944 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 174 IPR008974 GO:0005515
Lele14g1944 334 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 259 IPR045005 GO:0016567
Lele14g1944 334 SUPERFAMILY TRAF domain-like 34 173 - -
Lele14g1944 334 ProSiteProfiles BTB domain profile. 207 259 IPR000210 GO:0005515
Lele14g1944 334 Gene3D Potassium Channel Kv1.1; Chain A 175 307 IPR011333 -
Lele14g1944 334 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1944 Lele-ChrLele14 25738264 25741709 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1368 06 8801806 8807153 Lele14g1944 14 25738264 25741709 CCT
Lele07g1575 07 9737958 9741200 Lele14g1944 14 25738264 25741709 CCT
Lele05g1514 05 9710722 9724345 Lele14g1944 14 25738264 25741709 CCT
Lele14g1944 14 25738264 25741709 Lele14g1944 14 25738264 25741709 ECH
Lele14g1944 14 25738264 25741709 Lele15g0393 15 2269534 2273954 hybridization
Lele14g1944 14 25738264 25741709 Lele16g0416 16 2254256 2257712 hybridization