Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0416 ATGGGTAGGGTTCTCCGAGAAACGTCTAGGCCATCTTCAAATTCTTCATCCCCATCCCCATCTTCGGCACCTGCAACCACCTCATCATCATCTATAACCGATACTGTAAGGGGTTCTCACCAGTTCAAGATCTCGGGGTATTCCTTATCAAAAGGGATCGGGATCGGCAAATATATAGCATCTGACACGTTTTCAGTCGGTGGGTATGAATGGGCGATCTACTTTTACCCGGACGGGAAGAGTGTCGAGGACAATGCTACTTACGTATCACTATTTATAGCGCTTGCCAGTGAGGGGACGGACGTTAGGGCGCTTTTTGAGCTAACCCTTTTGGACCAGAGCGGGAAGGAGAGACATAAGGTTAATAGTCATTTTGAGAGGACGCTGGAAAGCGGGCCTTACACGTTAAAATACCGTGGCAGCATGTGGGGTTACAAGCGATTTTTCAAGAGAACAGTTCTGGAGACATCAGATTACCTTAAAGATGATTGCCTGTGTGTTACTTGCAGCGTTGGGGTTGTGAGGTCATACACAGAGGGCCCTAAAATCTACTCCATACCTATACCGCAATCTGACATGGGCCAGCAATTTGGGCGGCTACTTGAAAGTGAAAAAGGAAGTGATGTGAACTTTGAAGTTGATGGTGAAATTTTTGCTGCTCATAAATTGGTATTAGCAGCTCGTTCTCCTGTTTTCAGAGCCCAACTTTTTGGTCCTATGAAAGATCAGGACACTCGTTGTATAAAAGTTGAAGACGTGGAGGCTCCAGTTTTTAAGGCCTTGCTTCATTTTATATACTGGGACTCGCTGCCTGACATGCAAGAGCTTACAGGGTTGAACTCGAAATGGGCAACAACCTTAATGGCTCAACACCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAGAGGCTTAGGTTGATATGTGAAGCCAATCTGTGTGAAGATGTTGCAATAAATACTGTCGCTACAACTTTAGCCTTGGCGGAGCAGCATCATTGTTTCCAGCTCAAAGCAGTCTGTCTCAAATTTATTGCGACGCCTGAAAATCTCAGAGCTGTGATGCAGACTGATGGTTTTGAGTACCTGAAGGAAAGTTGCCCACCTGTTCTGACTGAGCTCTTGGAGTACGTGGCTAGATTTACTGAACATTCGGACTTCATGTGCAAGGATAGGACTGAAGCAATACTTGATGGCAGCGACATAAATGGTAGACGGGTGAAGCAAAGGCTCTAG 1233 0.4607 MGRVLRETSRPSSNSSSPSPSSAPATTSSSSITDTVRGSHQFKISGYSLSKGIGIGKYIASDTFSVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVNSHFERTLESGPYTLKYRGSMWGYKRFFKRTVLETSDYLKDDCLCVTCSVGVVRSYTEGPKIYSIPIPQSDMGQQFGRLLESEKGSDVNFEVDGEIFAAHKLVLAARSPVFRAQLFGPMKDQDTRCIKVEDVEAPVFKALLHFIYWDSLPDMQELTGLNSKWATTLMAQHLLAAADRYGLERLRLICEANLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATPENLRAVMQTDGFEYLKESCPPVLTELLEYVARFTEHSDFMCKDRTEAILDGSDINGRRVKQRL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0416 410 SMART math_3 42 154 IPR002083 GO:0005515
Lele16g0416 410 SMART BTB_4 207 316 IPR000210 GO:0005515
Lele16g0416 410 CDD BTB_POZ_BPM_plant 193 313 - -
Lele16g0416 410 FunFam BTB-POZ and math domain 1 183 310 - -
Lele16g0416 410 SUPERFAMILY POZ domain 184 314 IPR011333 -
Lele16g0416 410 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
Lele16g0416 410 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Lele16g0416 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 27 374 IPR045005 GO:0016567
Lele16g0416 410 CDD MATH 38 171 IPR002083 GO:0005515
Lele16g0416 410 FunFam BTB-POZ and math domain 1 316 393 - -
Lele16g0416 410 Gene3D - 316 391 - -
Lele16g0416 410 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Lele16g0416 410 MobiDBLite consensus disorder prediction 7 34 - -
Lele16g0416 410 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Lele16g0416 410 MobiDBLite consensus disorder prediction 1 34 - -
Lele16g0416 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Lele16g0416 410 CDD BACK_AtBPM-like 313 376 IPR034090 -
Lele16g0416 410 SUPERFAMILY TRAF domain-like 34 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0416 Lele-ChrLele16 2254256 2257712 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1368 06 8801806 8807153 Lele16g0416 16 2254256 2257712 CCT
Lele07g1575 07 9737958 9741200 Lele16g0416 16 2254256 2257712 CCT
Lele05g1514 05 9710722 9724345 Lele16g0416 16 2254256 2257712 CCT
Lele16g0416 16 2254256 2257712 Lele16g0416 16 2254256 2257712 ECH
Lele13g2012 13 27413902 27417204 Lele16g0416 16 2254256 2257712 hybridization
Lele14g1944 14 25738264 25741709 Lele16g0416 16 2254256 2257712 hybridization