Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03176 ATGTTCTCCTCAACCAGATGCGCTTTCCTGAGCAACTCGGGGTTAGGTGGGTGCaGCAGCTTGTGTGATGCTGCGCAGAAAAAGCGTTCAACTCGTTTGAGGGTGGTGAGTATGACCCCAAGCAGCAGCAGCAGCAGCAGGTCCGGTGATAGAAACGGCAGCGTTGTGATGGAGACGCCGTTGAAAGAATTGAAAAAGGAATCCACGGTGGCTGACGTGGACGATAACGCCATCTCCGCCGGCGGCCCTCAAGATGTCTACGGCGAGGATAGGGCTACGGAGGATCACTTTGTTACCCCTTGGAGTGTTTCTGTTGCCAGTGGTTATACACTATTGCGAGATCCCCATTTCAACAAAGGGTTGGCCTTCACTGAAGATGAGAGGGATGCCCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCTTTGCAGAAGTACATGGCAATGATGGATCTTCAGgagagaaatgaacggttattttacaaacttcttattgatcatgttgaagagttacttccagttgtatatactccaactgttggtgaagcttgccagaaatatggcagcatctttatgcatcctcagggtctttatataagtttgaaagagaagggaaagatccgtgaagtactaaggaattggcctgagaagaacattcaagtcatagttgtaactgatggagaacggatcctgggtcttggggatcttggttgtcaggggatgggaataccagtgggaaaactttctttatatacagcacttggaggagtccgcccttcagctTGTTTACCCATTACAATTGATGTGGGCACAAACAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTAAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGCACGAATTTATGACAGCAGTCAAGCAAACTTATGGGGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTAATCTGCTTGAGAAATATAGATCTACACATCTGGTCTTTAATGATGATATTCAGGGAACAGCATCCGTGGTTCTTGCTGGACTAGTTGCATCTCTGAAGTTGGTTGGGGGTAACTTAGCTGATCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGCATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCTCCACTGGAGGAAGTGCGCAAGAATATTTGGCTGGTGGACTCAAAGGGATTGATTGTCAGTTCTCGCAAAGATTCGCTCCAACATTTTAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAAAAATCTTCTAGATGCTGTTAATAAAATTAAGCCAACAGTGTTGATTGGAACATCGGGACAAGGAAGAACTTTTACTAAAGAAGTGATTGAGGCAATGGCTTCTATTAACAAGAGACCTATTATTCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGCACTGCTGAAGAAGCTTACAAGTGGAGCCAGGGACGTGCCATTTTTGCAAGTGGGAGTCCATTTCCCCCTGTTGAGTACGAGGGCAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATATTCCCTGGATTTGGTCTCGGTTTAATAATGTCTGGGACCATTCGAGTGCATGATGACCTGCTTCTGGCTGCCTCTGAGGCTTTGGCTGCACAAGTGAGCCAAGAGAACTTTGATAAGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCACACATAGCTGCCAATGTTGCTGCTAAGGCTTATGAACTTGGCTTGGCCACTCGCCTTCCTCAACCTAAAGATTTAGTGAAGTTTGCAGAGAGCTGTATGTATACCCCAGCCTACAGAAGCTACCGATGA 1944 0.3848 MFSSTRCAFLSNSGLGGCSSLCDAAQKKRSTRLRVVSMTPSSSSSSRSGDRNGSVVMETPLKELKKESTVADVDDNAISAGGPQDVYGEDRATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEDERDAHYLRGLLPPSVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTAVKQTYGEKVLIQFEDFANHNAFNLLEKYRSTHLVFNDDIQGTASVVLAGLVASLKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVKNLLDAVNKIKPTVLIGTSGQGRTFTKEVIEAMASINKRPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSQENFDKGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03176 647 SMART Malic_M_2 363 616 IPR012302 GO:0051287
Gma13g03176 647 Gene3D - 361 647 - -
Gma13g03176 647 PRINTS Malic enzyme signature 178 202 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 238 267 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 274 296 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 334 352 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 359 375 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 390 406 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PRINTS Malic enzyme signature 493 509 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 PANTHER MALIC ENZYME 12 647 - -
Gma13g03176 647 PANTHER MALIC ENZYME-RELATED 12 647 - -
Gma13g03176 647 Pfam Malic enzyme, N-terminal domain 172 353 IPR012301 GO:0004471
Gma13g03176 647 Pfam Malic enzyme, NAD binding domain 363 615 IPR012302 GO:0051287
Gma13g03176 647 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Gma13g03176 647 MobiDBLite consensus disorder prediction 33 55 - -
Gma13g03176 647 SMART malic_2 172 353 IPR012301 GO:0004471
Gma13g03176 647 CDD NAD_bind_1_malic_enz 363 641 - -
Gma13g03176 647 MobiDBLite consensus disorder prediction 33 53 - -
Gma13g03176 647 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 363 646 IPR036291 -
Gma13g03176 647 Gene3D - 106 360 IPR037062 GO:0004471
Gma13g03176 647 ProSitePatterns Malic enzymes signature. 359 375 IPR015884 GO:0004471
Gma13g03176 647 PIRSF ME 62 647 IPR001891 GO:0004470|GO:0004471
Gma13g03176 647 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 86 362 IPR046346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03176 Gma-Chr13 45899324 45905038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03176 K00029 - gmx:100800844 1259.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03176 13 45899324 45905038 Gma15g00189 15 1515642 1521470 ECH
Gma08g00328 08 2783868 2788254 Gma13g03176 13 45899324 45905038 ECH
Gma05g02212 05 43207160 43212678 Gma13g03176 13 45899324 45905038 ECH
Gma15g00189 15 1515642 1521470 Gma13g03176 13 45899324 45905038 ECH
Gma13g03176 13 45899324 45905038 Gma13g03176 13 45899324 45905038 ECH
Gma13g03176 13 45899324 45905038 Gma04g00784 04 7440357 7445425 ECH
Gma13g03176 13 45899324 45905038 Gma06g00777 06 7047642 7052919 ECH
Gma13g03176 13 45899324 45905038 Gma15g00189 15 1515642 1521470 GST
Gma13g03176 13 45899324 45905038 Gma07g00150 07 1273785 1276303 PCT
Gma13g03176 13 45899324 45905038 Gma08g01846 08 16573003 16578513 PCT
Gma07g00150 07 1273785 1276303 Gma13g03176 13 45899324 45905038 PCT
Gma08g01846 08 16573003 16578513 Gma13g03176 13 45899324 45905038 PCT