Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01846 ATGTTCTCCTCCAATGCATACTCCTTCATGTGCAAGCCGGGCATAGGTGGGTGGTCTTCGTGCAGCAACTTGTCTGCTTCACAGAGGAAGCTTTTGGGTTCTTCTTCGAGAATCACGTGTTGTGCTCCAACCAATAGCAAAAGCCACGGCGGCGTTGTCATGGAGAATGAGACAAATGGCTCTTCCACGGTGGACGACTTCGACGTCAACCCCATCCCCAGCggcggcgttcgggatgtgtacggcgaggacaaggccactgaggatcagtttgtgactccctGGAGTATCTCTGTTGCTAGTGGATATTCTTTGTTGAGAGATCCACACTACAACAAAGGACTGGCCTTCACTGAAAAAGAGAGGGATGCTCACTATTTGCGTGGCCTTCTTCCCCCATCAGTTATTTCTCAGGAAACTCAGGTGACGAAAATGATCCGACATATACGCCAGTATGAAGTTCCATTGCACAAGTACATAGCAATGATGGATCTTCAGgagaggaatgaaaggctgttttacaagcttctacttgatcatgttgaggagttactcccagttgtgtatactccaactgttggtgaagcttgtcagaaatatgggagcatcttcatgcatcctcagggtctttatataagtttgaaggagaaagggaggattcttgaagtactaaggaattggcctgagaagaacattcaagtcattgttgtaactgatggagagcgaattctgggtcttggggatctaggttgtcaggggatgggaataccagtaggaaaactttctttatattcagcacttggtggagttcgtccttctgctTGCTTGCCTATTACCATCGATGTGGGTACAAACAATCAGAAGTTGTTGCATGATGAATTATATTTTGGGCTCAGGCATAAACGAGCAACTGGGCAGGAATACACTGAACTTCTGCATGAATTTATGAATGCAGTCAAGCAAAATTATGGTGAAAGAATCCTCGTTCAGTTCGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCAACACATCTTGTCTTTAATGATGATATTCAGggaacagcatcagtggtccttgcaggagtagtttctgctctaaaattggttgggggagacttgactgatcacaggttcttattccttggtgctggagagGCTGGCACGGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACGGACAAATGTCCCCCTAGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTGAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCATGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTGTTAAGGAAATTAAGCCAACGGTGTTAATTGGAACATCAGGACAAGGGAGAACTTTTACTAAAGATGTTATTGAAGCTATGGCTTCCATTAATGAGAAACCAATTATTCTTTCTCTTTCCAACCCAACATCACAGTCGGAATGCACTGCTGAAGAAGCTTATACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCATTTGCCCCCGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGGCTAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGGACCATTCGAGTGCACGATGACCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAGGTGACCCAGAAGGACTATGACAAGGGACTCATATACCCACCATTCAGCAACATCAGAAAGATTTCAGCACGCATTGCTGCCAATGTTGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTCTATGTATACACCACTCTATAGAGGCTACCGGTGA 1926 0.3323 MFSSNAYSFMCKPGIGGWSSCSNLSASQRKLLGSSSRITCCAPTNSKSHGGVVMENETNGSSTVDDFDVNPIPSGGVRDVYGEDKATEDQFVTPWSISVASGYSLLRDPHYNKGLAFTEKERDAHYLRGLLPPSVISQETQVTKMIRHIRQYEVPLHKYIAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNQKLLHDELYFGLRHKRATGQEYTELLHEFMNAVKQNYGERILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGDLTDHRFLFLGAGEAGTGIAELIALETSKRTNVPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAVKEIKPTVLIGTSGQGRTFTKDVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQKDYDKGLIYPPFSNIRKISARIAANVAAKAYELGLATSLPQPKDLVKFAESSMYTPLYRGYR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01846 641 CDD NAD_bind_1_malic_enz 357 635 - -
Gma08g01846 641 ProSitePatterns Malic enzymes signature. 353 369 IPR015884 GO:0004471
Gma08g01846 641 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 74 641 - -
Gma08g01846 641 PIRSF ME 74 641 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PANTHER MALIC ENZYME-RELATED 74 641 - -
Gma08g01846 641 Gene3D - 100 354 IPR037062 GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 172 196 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 232 261 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 268 290 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 328 346 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 353 369 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 384 400 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 PRINTS Malic enzyme signature 487 503 IPR001891 GO:0004470|GO:0004471
Gma08g01846 641 Gene3D - 355 641 - -
Gma08g01846 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 357 640 IPR036291 -
Gma08g01846 641 SMART Malic_M_2 357 610 IPR012302 GO:0051287
Gma08g01846 641 Pfam Malic enzyme, N-terminal domain 166 347 IPR012301 GO:0004471
Gma08g01846 641 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 79 356 IPR046346 -
Gma08g01846 641 SMART malic_2 166 347 IPR012301 GO:0004471
Gma08g01846 641 Pfam Malic enzyme, NAD binding domain 357 609 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01846 Gma-Chr8 16573003 16578513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01846 K00029 - gmx:100785718 1271.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00328 08 2783868 2788254 Gma08g01846 08 16573003 16578513 ECH
Gma05g02212 05 43207160 43212678 Gma08g01846 08 16573003 16578513 ECH
Gma15g00189 15 1515642 1521470 Gma08g01846 08 16573003 16578513 ECH
Gma08g01846 08 16573003 16578513 Gma08g01846 08 16573003 16578513 ECH
Gma08g01846 08 16573003 16578513 Gma04g00784 04 7440357 7445425 ECH
Gma08g01846 08 16573003 16578513 Gma06g00777 06 7047642 7052919 ECH
Gma07g00150 07 1273785 1276303 Gma08g01846 08 16573003 16578513 GST
Gma13g03176 13 45899324 45905038 Gma08g01846 08 16573003 16578513 PCT
Gma15g00189 15 1515642 1521470 Gma08g01846 08 16573003 16578513 PCT
Gma08g01846 08 16573003 16578513 Gma13g03176 13 45899324 45905038 PCT
Gma08g01846 08 16573003 16578513 Gma15g00189 15 1515642 1521470 PCT