Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02212 ATGGGACACTGGTGCTTATCAAACTTGGGATTTTCTGGCTGCTGTGGCACTAATTCTTCAAAGAGAAAAATCTCAAAGGATCAGCATTATAACACTGGTGAAGATAAGAAAGTAATTGGcagagaaatggagagcacactgaaggccttgagagatggagagtcggtgttggacctcagcccaagatccaccgtcagtggcggcgttgaggacatctacggcgaggatcgcgccaccgaggatcaacttgttaccccatggaTTTTCTCGGTTGCCAGTGGGTACTCTTTGCTACGAGATCCACAGTACAACAAAGGGCTATCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGGCTCCTGCCTCCCACAGTCAGCACTCAGCAACTTCAGGAGAAGAAACTGATGAACAGCATCAGGCAATATCAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGACCTTCAGgagaggaatgaaaggctattttacaaacttctcattgataatgttgaggaattgctccctgttgtatatactcctaccgttggtgaggcttgccagaaatatgggagcatattcaggcgtcctcagggtctttacattagtttgaaagagaagggtaaaatccttgaggttttaaaaaattggcctgagaggagtattcaagttattgttgtaaccgacggtgagcggattttgggacttggggatcttggatgtcaggggatgggaattcctgttggtaaattggctttgtacacagcactaggaggagttcgtccttcagcaTGTTTGCCTATTACTATCGATGTGGGGACAAACAATGAGAAATTATTGAATGATGAATTCTACATTGGGCTTAGACAAAGGAGGGCAACTGGGCAGGAATATTATGACCTTATGCATGAGTTTATGACTGCTGTGAAGCAAAACTACGGGGAAAAAGTCCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTACTTGCTAAATATGGGACAACTCATCTCGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTAAAACTCATTGGTGGTACATTGCCTGAGCACACATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCCGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGGCACCCATAGAAGAGAGTCGCAAGAAGATATGGCTTGTAGACTCAAAGGGTTTAATTGTTAGTTCACGAAAGAATTCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAACATGAGCCTGTTAACAGTCTCCTAGAGGCAGTCAAGGTGATCAAGCCAACAGTTTTGATTGGATCATCAGGAGTGGGAAGAACATTTACAAAGGAAGTAGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTCTGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTACATTTTCCCTGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATTCGAGTACATGACGATATGCTTCTAGCAGCTTCGGAATCCTTGGCTAAACAAGTGAGTGAGGAGAACTACAAAAATGGCTTGATTTACCCACCATTCTCTAATATCAGAAGAATTTCGGCTAATATAGCTGCAAATGTTGCTGCCAAGGCATACGAACTGGGCTTGGCTACCCGTCTTCCTCGTCCTCAGAATCTTGTGAAGTGTGCTGAGAGTTGCATGTATACTCCCGTATACCGCAACTATAGGTGA 1902 0.3307 MGHWCLSNLGFSGCCGTNSSKRKISKDQHYNTGEDKKVIGREMESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVTPWIFSVASGYSLLRDPQYNKGLSFTEKERDAHYLRGLLPPTVSTQQLQEKKLMNSIRQYQVPLQKYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQRRATGQEYYDLMHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKAPIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSGVGRTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASESLAKQVSEENYKNGLIYPPFSNIRRISANIAANVAAKAYELGLATRLPRPQNLVKCAESCMYTPVYRNYR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02212 633 ProSitePatterns Malic enzymes signature. 345 361 IPR015884 GO:0004471
Gma05g02212 633 PIRSF ME 57 633 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 349 632 IPR036291 -
Gma05g02212 633 CDD NAD_bind_1_malic_enz 349 627 - -
Gma05g02212 633 PANTHER MALIC ENZYME 33 633 - -
Gma05g02212 633 PANTHER MALIC ENZYME-RELATED 33 633 - -
Gma05g02212 633 Gene3D - 92 346 IPR037062 GO:0004471
Gma05g02212 633 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 71 348 IPR046346 -
Gma05g02212 633 SMART Malic_M_2 349 602 IPR012302 GO:0051287
Gma05g02212 633 Pfam Malic enzyme, N-terminal domain 158 338 IPR012301 GO:0004471
Gma05g02212 633 Gene3D - 347 633 - -
Gma05g02212 633 SMART malic_2 158 339 IPR012301 GO:0004471
Gma05g02212 633 Pfam Malic enzyme, NAD binding domain 349 601 IPR012302 GO:0051287
Gma05g02212 633 PRINTS Malic enzyme signature 164 188 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 224 253 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 260 282 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 320 338 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 345 361 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 376 392 IPR001891 GO:0004470|GO:0004471
Gma05g02212 633 PRINTS Malic enzyme signature 479 495 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02212 Gma-Chr5 43207160 43212678 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02212 K00029 - gmx:100782096 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02212 05 43207160 43212678 Gma08g01846 08 16573003 16578513 ECH
Gma05g02212 05 43207160 43212678 Gma13g03176 13 45899324 45905038 ECH
Gma05g02212 05 43207160 43212678 Gma15g00189 15 1515642 1521470 ECH
Gma05g02212 05 43207160 43212678 Gma04g00784 04 7440357 7445425 ECH
Gma05g02212 05 43207160 43212678 Gma06g00777 06 7047642 7052919 ECH
Gma05g02212 05 43207160 43212678 Gma05g02212 05 43207160 43212678 ECH
Gma05g02212 05 43207160 43212678 Gma08g00328 08 2783868 2788254 GST