Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0071 . . . . . . Aed11g0425 . . . Ahy15g1768 . Aip05g02009 . . . Amo15g0783 . Apr7g1428 . . . . . . . . Bva11g00933 Car02g00808 . Cca06g00581 . . . . . . . . . Gma02g01042 Gma01g00511 . . . . . . Lal6g0814 . . . . . Lan11g0816 . . . . . . . . . . . . . . . . . Lja2g1214 . Mal6g2036 . . . . . . . Mtr5g1726 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1528 . . Sto6g2969 Tpr2g2048 . . . Tsu05g01999 . . . . . . . . . . . . .
Vvi1g0072 . . . . . . Aed11g0424 . . . Ahy15g1764 . Aip05g02012 . . . Amo15g0788 . Apr7g1431 . . . . . . . . Bva11g00934 Car02g00807 . Cca06g00582 . . . . . . . . . Gma02g01041 Gma01g00510 . . Gso2g0957 Gso2g0957 . . . Lal22g0721 . . . . . . . . . . . . . . . . . . . . . . Lja2g1212 . Mal6g2031 . . . . . . . Mtr5g1721 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1529 . . Sto6g2970 Tpr2g2047 . . . Tsu05g01998 . . . . . . . . . . . . .
Vvi1g0073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0074 . . . . . . . . . Aev03g0382 Ahy15g1763 Ahy13g3882 Aip05g02013 Aip03g04317 . . Amo15g0790 Amo13g4889 Apr7g1432 Apr3g1507 . . . . . . Bva08g01559 Bva11g00935 Car02g00806 . . . . . . Dod04g1138 . . . . Gma02g01040 Gma01g00509 . . Gso2g0956 Gso2g0956 . . . Lal22g0722 . . . Lal15g0783 . . . . . . . . . . . . . . . . . . Lja2g1211 . Mal6g2028 . . . . . . . Mtr5g1720 . Phac2g02619 . Phco4g01939 . . . . . Pste1g01725 . . . . . . . Pvu2g1728 . . . . . Spst3g02356 . . . Sto11g0887 . Tpr2g2045 . . . Tsu05g01993 . . . . . . . . . . . . .
Vvi1g0075 . . . . . . Aed11g0420 . . . . . . . . . . . Apr7g1434 . . . . . . . . Bva11g00936 Car02g00804 . Cca06g00585 . . . . . . . . . Gma02g01038 Gma01g00507 . . Gso2g0954 Gso2g0954 . . . Lal22g0724 . . . . . . . . . . . . . . . . . . . . . . Lja2g1209 . Mal6g2023 . . . . . . . Mtr5g1717 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1534 . Sto11g0889 Sto6g2971 Tpr2g2043 . . . Tsu05g01988 . . . . . . . . . . . . .
Vvi1g0076 . . . . . . Aed11g0419 . . . . . . . . . . . Apr7g1435 . . . . . . . . . Car02g00803 . Cca06g00586 . . . . . . . . . . Gma01g00506 . . . . . . . Lal22g0725 . . . . . . . . . . . . . . . . . . . . . . Lja2g1208 . Mal6g2022 . . . . . . . Mtr5g1716 . . . . . . . Psa2g2899 Psa7g2935 . . . . . . . . . . . . . . . . Ssu2g1535 . Sto11g0890 . Tpr2g2042 . . . Tsu05g01987 . . . . . . . . . . . . .
Vvi1g0077 . . . . . . . . . . . Ahy13g3881 . Aip03g04316 . . . Amo13g4888 . Apr3g1506 . . . . . . . Bva11g00937 . . . . . . . Dod04g1137 . . . . . . . . . . . . . . . Lal23g0818 . . . . . . . . . . . . . . . . . . . . . Lja4g3503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g0891 . . . . . . . . . . . . . . . . . . .
Vvi1g0078 . . . . . . Aed11g0418 . . Aev03g0385 Ahy15g1762 Ahy13g3880 Aip05g02014 Aip03g04314 . . Amo15g0793 Amo13g4887 Apr7g1436 Apr3g1505 . . . . . . Bva08g01556 Bva11g00938 Car06g01858 . Cca06g00587 . . . . Dod04g1134 . . . . Gma02g01036 Gma01g00505 . . Gso2g0952 Gso2g0952 . . Lal6g0815 Lal22g0726 . Lal23g0817 Lal16g0815 . Lan11g0818 Lan11g0818 . Lan11g0818 Lan11g0818 . . . . . . . . . . . . . Lja2g1207 Lja4g3502 Mal6g2021 . Mepo2g02936 . Mesa13g02117 . . . Mtr5g1715 . Phac2g04301 . Phco4g01936 . . . . . Pste3g04010 . . . . . . . Pvu2g1726 . . . . . Spst3g01861 . Ssu2g1536 . Sto11g0893 Sto6g2974 Tpr2g2041 . Trre7g02246 . Tsu05g01984 . . . . . . . . . Vivi5g03640 . . .
Vvi1g0079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0080 Acco06g3126 . Accr5g00048 . Adu03g04388 . . . . Aev03g2354 . Ahy13g4333 . Aip03g04807 Alju03g0057 . . Amo13g5372 . Apr3g2150 Arst3g05798 . . . Bisa07g0126 . . . Car06g01222 . . Cca09g01645 Dere02g3115 . . Dod04g1878 Enph4g0067 . Glsi11g3384 . . . Gma08g00841 . . . . . . . . . . . . . . . . . Lapu3g02691 . Lasa7g03783 . Lele13g0043 Lele14g0039 Lele15g2400 Lele16g2358 . . . . . Lja4g4211 . . Mepo2g03696 . Mesa13g01474 . Mibi06g0045 . . . . . Phco4g02171 . Prci3g1356 . . Psa7g1990 Pste3g02408 . . . . . . . Pvu2g1928 . Rops2g01527 . Seca12g05479 . Spst3g01898 . . Ssu5g2152 Sto13g0094 . . . Trre7g04311 . . . Vian1g02816 . Vifa6g01938 . Vimu11g01625 . Viun3g02039 . Vivi5g04709 . . Vra7g1011
   
Previous Page 8 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0071 Chr1 732540 735514 +
Aed Aed11g0425 Chr11 3631933 3634829 -
Ahy Ahy15g1768 Chr15 58908390 58911783 -
Aip Aip05g02009 Chr05 68664643 68668017 +
Amo Amo15g0783 Chr15 53751558 53754932 +
Apr Apr7g1428 Chr7 21393109 21396584 +
Bva Bva11g00933 Chr11 11409326 11411604 +
Car Car02g00808 Chr02 11504087 11509221 -
Cca Cca06g00581 Chr06 16961994 16966082 +
Gma Gma02g01042 Chr02 11302835 11306612 -
Gma Gma01g00511 Chr01 7288224 7291535 -
Lal Lal6g0814 Chr6 5461869 5464669 +
Lan Lan11g0816 Chr11 7732358 7735207 +
Lja Lja2g1214 Chr2 11502169 11505185 -
Mal Mal6g2036 Chr6 46190340 46198404 -
Mtr Mtr5g1726 Chr5 19097799 19103227 -
Ssu Ssu2g1528 Chr2 62393538 62397334 +
Sto Sto6g2969 Chr6 36844605 36846907 +
Tpr Tpr2g2048 Chr2 24548361 24552982 -
Tsu Tsu05g01999 Chr05 23080554 23086084 -
Vvi Vvi1g0072 Chr1 737108 738380 +
Aed Aed11g0424 Chr11 3628896 3630956 -
Ahy Ahy15g1764 Chr15 58616976 58619029 -
Aip Aip05g02012 Chr05 68948019 68950023 +
Amo Amo15g0788 Chr15 54080416 54082460 +
Apr Apr7g1431 Chr7 21420023 21421243 +
Bva Bva11g00934 Chr11 11412129 11413367 +
Car Car02g00807 Chr02 11499430 11501154 -
Cca Cca06g00582 Chr06 16971393 16973426 +
Gma Gma02g01041 Chr02 11298489 11299995 -
Gma Gma01g00510 Chr01 7285563 7287022 -
Gso Gso2g0957 Chr2 11100095 11101610 -
Gso Gso2g0957 Chr2 11100095 11101610 -
Lal Lal22g0721 Chr22 5155513 5156841 -
Lja Lja2g1212 Chr2 11495683 11496881 -
Mal Mal6g2031 Chr6 46098974 46100611 -
Mtr Mtr5g1721 Chr5 19074909 19077469 -
Ssu Ssu2g1529 Chr2 62398256 62402126 +
Sto Sto6g2970 Chr6 36848633 36850623 +
Tpr Tpr2g2047 Chr2 24543391 24545817 -
Tsu Tsu05g01998 Chr05 23071901 23074335 -
Vvi Vvi1g0073 Chr1 741212 742052 +
Vvi Vvi1g0074 Chr1 742206 750870 +
Aev Aev03g0382 Chr03 2803140 2808005 +
Ahy Ahy15g1763 Chr15 58563875 58571239 -
Ahy Ahy13g3882 Chr13 138282477 138288624 -
Aip Aip05g02013 Chr05 68995117 69002389 +
Aip Aip03g04317 Chr03 127639571 127644719 -
Amo Amo15g0790 Chr15 54128353 54135582 +
Amo Amo13g4889 Chr13 147852880 147859121 -
Apr Apr7g1432 Chr7 21422922 21433612 +
Apr Apr3g1507 Chr3 29857942 29872909 -
Bva Bva08g01559 Chr08 8195242 8201958 -
Bva Bva11g00935 Chr11 11414334 11421182 +
Car Car02g00806 Chr02 11488615 11498484 -
Dod Dod04g1138 Chr04 32007368 32015898 -
Gma Gma02g01040 Chr02 11286429 11295255 -
Gma Gma01g00509 Chr01 7270418 7278786 -
Gso Gso2g0956 Chr2 11088505 11097382 -
Gso Gso2g0956 Chr2 11088505 11097382 -
Lal Lal22g0722 Chr22 5158029 5165978 +
Lal Lal15g0783 Chr15 5621073 5628689 -
Lja Lja2g1211 Chr2 11486427 11494539 -
Mal Mal6g2028 Chr6 45964839 45980787 -
Mtr Mtr5g1720 Chr5 19062397 19073771 -
Phac Phac2g02619 Chr2 27404981 27416535 -
Phco Phco4g01939 Chr4 38497962 38507975 -
Pste Pste1g01725 Chr1 5295426 5304462 -
Pvu Pvu2g1728 Chr2 31046730 31059276 -
Spst Spst3g02356 Chr3 67281516 67291517 -
Sto Sto11g0887 Chr11 9497181 9503630 +
Tpr Tpr2g2045 Chr2 24525917 24536852 -
Tsu Tsu05g01993 Chr05 23027310 23037270 -
Vvi Vvi1g0075 Chr1 753975 759452 +
Aed Aed11g0420 Chr11 3607166 3611063 -
Apr Apr7g1434 Chr7 21437540 21441372 +
Bva Bva11g00936 Chr11 11421887 11425356 +
Car Car02g00804 Chr02 11481026 11484036 -
Cca Cca06g00585 Chr06 17027898 17037842 +
Gma Gma02g01038 Chr02 11273259 11276250 -
Gma Gma01g00507 Chr01 7232979 7235632 -
Gso Gso2g0954 Chr2 11075185 11078854 -
Gso Gso2g0954 Chr2 11075185 11078854 -
Lal Lal22g0724 Chr22 5171387 5175063 +
Lja Lja2g1209 Chr2 11479872 11483426 -
Mal Mal6g2023 Chr6 45801333 45804654 -
Mtr Mtr5g1717 Chr5 19036823 19041415 -
Ssu Ssu2g1534 Chr2 62428792 62431512 +
Sto Sto11g0889 Chr11 9508418 9510031 +
Sto Sto6g2971 Chr6 36854222 36857531 -
Tpr Tpr2g2043 Chr2 24517134 24521520 -
Tsu Tsu05g01988 Chr05 22971293 22975288 -
Vvi Vvi1g0076 Chr1 760513 763140 +
Aed Aed11g0419 Chr11 3604121 3606710 -
Apr Apr7g1435 Chr7 21437574 21446007 +
Car Car02g00803 Chr02 11473377 11475954 -
Cca Cca06g00586 Chr06 17038364 17040841 -
Gma Gma01g00506 Chr01 7227897 7230383 -
Lal Lal22g0725 Chr22 5175947 5178397 +
Lja Lja2g1208 Chr2 11476232 11478691 -
Mal Mal6g2022 Chr6 45792882 45795359 -
Mtr Mtr5g1716 Chr5 19030107 19032843 -
Psa Psa2g2899 Chr2 335169640 335172518 +
Psa Psa7g2935 Chr7 209998743 210001925 -
Ssu Ssu2g1535 Chr2 62442038 62444531 +
Sto Sto11g0890 Chr11 9513257 9515668 +
Tpr Tpr2g2042 Chr2 24512521 24515413 -
Tsu Tsu05g01987 Chr05 22967568 22970048 -
Vvi Vvi1g0077 Chr1 763715 765817 -
Ahy Ahy13g3881 Chr13 138279298 138281835 +
Aip Aip03g04316 Chr03 127635949 127638361 +
Amo Amo13g4888 Chr13 147849691 147852332 +
Apr Apr3g1506 Chr3 29855146 29857961 +
Bva Bva11g00937 Chr11 11425566 11428375 -
Dod Dod04g1137 Chr04 32003936 32006603 +
Lal Lal23g0818 Chr23 10653152 10655302 +
Lja Lja4g3503 Chr4 65904513 65906591 +
Sto Sto11g0891 Chr11 9515949 9518087 -
Vvi Vvi1g0078 Chr1 770275 779095 -
Aed Aed11g0418 Chr11 3593514 3599908 +
Aev Aev03g0385 Chr03 2815015 2820266 -
Ahy Ahy15g1762 Chr15 58394943 58402308 +
Ahy Ahy13g3880 Chr13 138265065 138271370 +
Aip Aip05g02014 Chr05 69170827 69177883 -
Aip Aip03g04314 Chr03 127619454 127625785 +
Amo Amo15g0793 Chr15 54297141 54304404 -
Amo Amo13g4887 Chr13 147835155 147841368 +
Apr Apr7g1436 Chr7 21450367 21459451 -
Apr Apr3g1505 Chr3 29845605 29853357 +
Bva Bva08g01556 Chr08 8179242 8185514 +
Bva Bva11g00938 Chr11 11429706 11436384 -
Car Car06g01858 Chr06 18476197 18483750 -
Cca Cca06g00587 Chr06 17055073 17061715 -
Dod Dod04g1134 Chr04 31983198 31989527 +
Gma Gma02g01036 Chr02 11252529 11258704 +
Gma Gma01g00505 Chr01 7213359 7217408 +
Gso Gso2g0952 Chr2 11054522 11060887 +
Gso Gso2g0952 Chr2 11054522 11060887 +
Lal Lal6g0815 Chr6 5468951 5475402 -
Lal Lal22g0726 Chr22 5182455 5187259 -
Lal Lal23g0817 Chr23 10647280 10652347 +
Lal Lal16g0815 Chr16 5262345 5273646 -
Lan Lan11g0818 Chr11 7763686 7766162 -
Lan Lan11g0818 Chr11 7763686 7766162 -
Lan Lan11g0818 Chr11 7763686 7766162 -
Lan Lan11g0818 Chr11 7763686 7766162 -
Lja Lja2g1207 Chr2 11464436 11471616 +
Lja Lja4g3502 Chr4 65897042 65903428 +
Mal Mal6g2021 Chr6 45756813 45760277 +
Mepo Mepo2g02936 Chr2 39138078 39142535 +
Mesa Mesa13g02117 Chr13 24785913 24789899 -
Mtr Mtr5g1715 Chr5 19016751 19022125 +
Phac Phac2g04301 Chr2 41482396 41484785 -
Phco Phco4g01936 Chr4 38476706 38480621 +
Pste Pste3g04010 Chr3 34080667 34084396 -
Pvu Pvu2g1726 Chr2 31027215 31034525 +
Spst Spst3g01861 Chr3 34113488 34114819 -
Ssu Ssu2g1536 Chr2 62527390 62531515 -
Sto Sto11g0893 Chr11 9523292 9526988 -
Sto Sto6g2974 Chr6 36876765 36880678 -
Tpr Tpr2g2041 Chr2 24497309 24502576 +
Trre Trre7g02246 Chr7 17983824 17987706 +
Tsu Tsu05g01984 Chr05 22870541 22875851 +
Vivi Vivi5g03640 Chr5 129617011 129624021 +
Vvi Vvi1g0079 Chr1 791377 792711 +
Vvi Vvi1g0080 Chr1 793797 796288 +
Acco Acco06g3126 Chr06 41684691 41687045 +
Accr Accr5g00048 Chr5 1267048 1269491 -
Adu Adu03g04388 Chr03 132889170 132892040 +
Aev Aev03g2354 Chr03 25018566 25020462 +
Ahy Ahy13g4333 Chr13 143008883 143011901 +
Aip Aip03g04807 Chr03 132371973 132374920 +
Alju Alju03g0057 Chr03 1241276 1243449 -
Amo Amo13g5372 Chr13 154067204 154070157 +
Apr Apr3g2150 Chr3 37398997 37401058 +
Arst Arst3g05798 Chr3 131652820 131655676 +
Bisa Bisa07g0126 Chr07 2537575 2542140 -
Car Car06g01222 Chr06 12050904 12053826 -
Cca Cca09g01645 Chr09 40315581 40317465 +
Dere Dere02g3115 Chr02 37401591 37404102 -
Dod Dod04g1878 Chr04 41745810 41748998 +
Enph Enph4g0067 Chr4 1717573 1720915 +
Glsi Glsi11g3384 Chr11 54719345 54722341 +
Gma Gma08g00841 Chr08 6915487 6918441 +
Lapu Lapu3g02691 Chr3 49549512 49552334 -
Lasa Lasa7g03783 Chr7 614446887 614448029 +
Lele Lele13g0043 Chr13 479739 482626 -
Lele Lele14g0039 Chr14 601170 603374 -
Lele Lele15g2400 Chr15 28269966 28272411 +
Lele Lele16g2358 Chr16 23988248 23991041 +
Lja Lja4g4211 Chr4 75552765 75555921 +
Mepo Mepo2g03696 Chr2 46276498 46279076 +
Mesa Mesa13g01474 Chr13 17605212 17606467 -
Mibi Mibi06g0045 Chr06 656066 657846 -
Phco Phco4g02171 Chr4 42402617 42405186 -
Prci Prci3g1356 Chr3 22019932 22022634 +
Psa Psa7g1990 Chr7 145329388 145331567 +
Pste Pste3g02408 Chr3 17052596 17055117 +
Pvu Pvu2g1928 Chr2 34267806 34270405 -
Rops Rops2g01527 Chr2 22646649 22648983 -
Seca Seca12g05479 Chr12 145672645 145675419 +
Spst Spst3g01898 Chr3 40668048 40670271 +
Ssu Ssu5g2152 Chr5 62029306 62032447 +
Sto Sto13g0094 Chr13 783825 786651 -
Trre Trre7g04311 Chr7 51089965 51092731 +
Vian Vian1g02816 Chr1 44035311 44037266 -
Vifa Vifa6g01938 Chr6 721102221 721103196 -
Vimu Vimu11g01625 Chr11 20187341 20192558 +
Viun Viun3g02039 Chr3 16326840 16329809 +
Vivi Vivi5g04709 Chr5 145919541 145920907 -
Vra Vra7g1011 Chr7 24408936 24411742 -
Phac Phac2g04301 Chr2 41482396 41484785 -
Psa Psa7g2935 Chr7 209998743 210001925 -
Aev Aev03g2354 Chr03 25018566 25020462 +
Ahy Ahy13g4333 Chr13 143008883 143011901 +
Aip Aip03g04807 Chr03 132371973 132374920 +
Amo Amo13g5372 Chr13 154067204 154070157 +
Dod Dod04g1878 Chr04 41745810 41748998 +