Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g00809 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0065 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0068 . . . . . . Aed11g0433 . . . . . . . . . . . . . . . . . . . Bva08g01563 . . . Cca06g00577 . . . . . . . . . Gma02g01047 . . . Gso2g0963 . . . Lal6g0812 . . . . . Lan11g0814 . . . . . Lapu3g02317 . Lasa7g02893 . . . . . . . . . . . Mal6g2045 . Mepo2g02991 . . . . . Mtr5g1730 . Phac2g01562 . Phco4g01889 . . . . Psa7g3068 Pste3g04055 . . . . . . . Pvu2g1033 . . . . . Spst3g02315 . Ssu2g1522 . . Sto6g2967 Tpr2g2053 . Trre7g01976 . Tsu05g02002 . . . . . Vimu11g00795 . . . Vivi5g03753 . . .
Vvi1g0069 . . . . . . . . . . . . . . . . . . Apr7g1426 . . . . . . . . . Car06g01855 . . . . . . . . . . . . . . . . . . . . . . . . Lal15g0782 . . . . . . . . . . . . . . . . . . Lja2g1218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0070 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00932 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0061 Chr1 656141 666715 +
Vvi Vvi1g0062 Chr1 668068 673507 -
Car Car02g00811 Chr02 11557378 11566338 +
Vvi Vvi1g0063 Chr1 679715 684800 -
Vvi Vvi1g0064 Chr1 688288 695812 +
Car Car02g00809 Chr02 11517282 11522423 -
Vvi Vvi1g0065 Chr1 698928 706792 -
Vvi Vvi1g0066 Chr1 711077 713026 -
Vvi Vvi1g0067 Chr1 715659 718620 -
Vvi Vvi1g0068 Chr1 721721 725418 +
Aed Aed11g0433 Chr11 3766337 3768855 -
Bva Bva08g01563 Chr08 8210945 8213428 -
Cca Cca06g00577 Chr06 16929194 16931988 +
Gma Gma02g01047 Chr02 11331406 11334348 +
Gso Gso2g0963 Chr2 11147562 11151108 -
Lal Lal6g0812 Chr6 5448941 5451417 -
Lan Lan11g0814 Chr11 7704130 7706862 -
Lapu Lapu3g02317 Chr3 44456443 44460230 +
Lasa Lasa7g02893 Chr7 556725044 556728920 +
Mal Mal6g2045 Chr6 46721977 46727871 -
Mepo Mepo2g02991 Chr2 39569238 39574543 +
Mtr Mtr5g1730 Chr5 19137651 19141808 -
Phac Phac2g01562 Chr2 15291686 15295520 -
Phco Phco4g01889 Chr4 37459083 37462890 -
Psa Psa7g3068 Chr7 223758378 223762271 +
Pste Pste3g04055 Chr3 35197934 35202328 +
Pvu Pvu2g1033 Chr2 19665509 19669530 -
Spst Spst3g02315 Chr3 66602701 66606761 -
Ssu Ssu2g1522 Chr2 62334443 62347454 +
Sto Sto6g2967 Chr6 36834044 36837549 +
Tpr Tpr2g2053 Chr2 24584317 24587552 -
Trre Trre7g01976 Chr7 15662867 15667473 -
Tsu Tsu05g02002 Chr05 23133677 23229949 -
Vimu Vimu11g00795 Chr11 8258478 8259921 -
Vivi Vivi5g03753 Chr5 131232219 131236349 +
Vvi Vvi1g0069 Chr1 727176 728802 +
Apr Apr7g1426 Chr7 21382996 21386117 +
Car Car06g01855 Chr06 18425899 18428589 +
Lal Lal15g0782 Chr15 5615393 5618481 +
Lja Lja2g1218 Chr2 11530371 11532380 -
Vvi Vvi1g0070 Chr1 729515 731550 -
Bva Bva11g00932 Chr11 11405437 11406394 -