Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1381 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1383 . . . . . . Aed1g0270 . . . Ahy18g2056 . Aip08g02375 . . . . . Apr2g0662 . . . . . . . Bva09g01145 Bva07g01410 . . Cca10g01436 . . . . . . . . . . . . . . . . . . . . Lal20g0498 . . . . . . . . . . . . . . . . . . . . Lja3g3972 . Mal4g2012 . . . . . . . Mtr2g2214 Mtr8g1470 . . Phco10g00604 . . . . Psa1g0119 . . . . . . . . Pvu5g0611 . . . . . . . Ssu8g1476 . . Sto7g1936 Tpr7g3138 . . . Tsu02g03775 . . . . . . . . . . . . .
Vvi19g1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1385 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1386 . . . . Adu07g01522 . Aed1g0268 . Aev10g0823 . Ahy18g1922 . Aip08g02191 . . . . . Apr2g0667 . Arst7g01955 . Bach13g00589 . . . Bva09g01146 Bva07g01409 . . Cca10g01443 . . . Dod10g0637 . . . . . Gma08g01514 . . . Gso8g1366 . . . . Lal1g1513 . . . Lal11g1542 . . . . . . Lapu5g01276 . Lasa1g04572 . . . . . . . . . Lja3g3973 . Mal4g2019 . Mepo6g02578 . Mesa5g01977 . . . Mtr2g2209 . . . Phco10g00499 . . . . . Pste3g01788 . . . . . . . Pvu5g0513 . Rops7g01792 . Seca4g06782 . . . Ssu8g1480 . . . Tpr7g3136 . Trre11g03476 . Tsu02g03771 . Vian11g01392 . Vifa1g04472 . Vimu4g01611 . Viun1g00837 . . . Vra5g2265 .
Vvi19g1387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1388 . Acco08g2233 . . Adu07g01516 . . . Aev10g0825 . Ahy18g1924 . Aip08g02193 . . Alju10g2211 . . Apr2g0668 Apr5g0800 Arst7g01951 Arst7g01951 . . . Bisa02g2144 Bva09g01148 Bva07g01408 . . . . . Dere07g2077 Dod10g0636 . . Enph8g1210 . Glsi04g2159 Gma08g01513 Gma15g02497 . . Gso8g1365 Gso8g1365 . . . Lal1g1514 . Lal20g0501 . Lal11g1545 . . . . . . Lapu5g01278 . Lasa1g04571 . . . . . . Lele30g0070 . Lele32g1308 Lja3g3974 . Mal4g2020 Mal5g2127 Mepo6g02577 Mepo1g03173 Mesa5g01978 Mesa29g03594 . Mibi07g2051 Mtr2g2208 Mtr8g1469 . . Phco10g00498 Phco9g01959 . Prci6g2793 . . Pste3g01783 . . Pte15g01542 Pte1g01128 . . . Pvu5g0510 Pvu11g1858 . . . Seca4g06783 Spst5g01714 Spst11g00438 . . Sto4g1777 . Tpr7g3135 . Trre11g03477 Trre15g01711 Tsu02g03770 . . Vian5g00492 . . Vimu4g01609 Vimu5g00899 . . . Vivi7g00163 . .
Vvi19g1389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1380 Chr19 22939141 22941204 +
Vvi Vvi19g1381 Chr19 22972848 22973181 -
Vvi Vvi19g1382 Chr19 22999084 22999621 -
Vvi Vvi19g1383 Chr19 23001354 23009729 +
Aed Aed1g0270 Chr1 4459227 4464587 -
Ahy Ahy18g2056 Chr18 109673647 109678499 -
Aip Aip08g02375 Chr08 101154568 101159210 -
Apr Apr2g0662 Chr2 7893335 7901592 +
Bva Bva09g01145 Chr09 6022937 6027609 +
Bva Bva07g01410 Chr07 14390502 14395061 -
Cca Cca10g01436 Chr10 21791314 21803522 +
Lal Lal20g0498 Chr20 4240495 4246330 +
Lja Lja3g3972 Chr3 78322220 78327806 +
Mal Mal4g2012 Chr4 42984044 42989429 +
Mtr Mtr2g2214 Chr2 33330972 33337331 -
Mtr Mtr8g1470 Chr8 18826077 18828728 +
Phco Phco10g00604 Chr10 6711631 6717700 -
Psa Psa1g0119 Chr1 7122732 7128435 +
Pvu Pvu5g0611 Chr5 8074343 8080993 -
Ssu Ssu8g1476 Chr8 29727097 29732692 +
Sto Sto7g1936 Chr7 24891761 24900036 -
Tpr Tpr7g3138 Chr7 38874659 38880763 -
Tsu Tsu02g03775 Chr02 42843661 42850038 -
Vvi Vvi19g1384 Chr19 23010783 23011998 +
Vvi Vvi19g1385 Chr19 23036858 23037511 -
Vvi Vvi19g1386 Chr19 23045501 23055102 -
Adu Adu07g01522 Chr07 35271066 35283916 +
Aed Aed1g0268 Chr1 4430121 4435159 +
Aev Aev10g0823 Chr10 10597796 10605698 -
Ahy Ahy18g1922 Chr18 96575247 96584642 -
Aip Aip08g02191 Chr08 89232053 89241039 -
Apr Apr2g0667 Chr2 8009703 8017008 -
Arst Arst7g01955 Chr7 34415294 34425330 +
Bach Bach13g00589 Chr13 11318820 11324152 +
Bva Bva09g01146 Chr09 6028297 6034973 -
Bva Bva07g01409 Chr07 14384499 14389545 +
Cca Cca10g01443 Chr10 21945637 21952195 -
Dod Dod10g0637 Chr10 19996389 20004304 +
Gma Gma08g01514 Chr08 13267127 13275452 +
Gso Gso8g1366 Chr8 13081484 13089729 +
Lal Lal1g1513 Chr1 17262260 17270350 -
Lal Lal11g1542 Chr11 18549521 18556331 -
Lapu Lapu5g01276 Chr5 25568228 25580339 -
Lasa Lasa1g04572 Chr1 754677103 754684637 +
Lja Lja3g3973 Chr3 78340471 78348843 -
Mal Mal4g2019 Chr4 43163054 43172377 -
Mepo Mepo6g02578 Chr6 35488587 35495793 +
Mesa Mesa5g01977 Chr5 31251771 31260691 -
Mtr Mtr2g2209 Chr2 33146068 33154012 +
Phco Phco10g00499 Chr10 5129464 5140509 +
Pste Pste3g01788 Chr3 11552461 11555350 +
Pvu Pvu5g0513 Chr5 5749223 5757201 +
Rops Rops7g01792 Chr7 28306393 28316774 -
Seca Seca4g06782 Chr4 141138306 141146294 -
Ssu Ssu8g1480 Chr8 29865876 29873297 -
Tpr Tpr7g3136 Chr7 38840407 38849309 +
Trre Trre11g03476 Chr11 47336356 47349578 -
Tsu Tsu02g03771 Chr02 42736547 42745260 +
Vian Vian11g01392 Chr11 23283424 23291612 +
Vifa Vifa1g04472 Chr1 694298857 694305622 +
Vimu Vimu4g01611 Chr4 17273901 17283278 +
Viun Viun1g00837 Chr1 10588743 10598361 -
Vra Vra5g2265 Chr5 28885438 28896771 +
Vvi Vvi19g1387 Chr19 23060321 23061607 +
Vvi Vvi19g1388 Chr19 23087103 23089747 +
Acco Acco08g2233 Chr08 37857468 37861495 -
Adu Adu07g01516 Chr07 34610043 34614552 -
Aev Aev10g0825 Chr10 10634065 10638954 +
Ahy Ahy18g1924 Chr18 96877510 96882313 +
Aip Aip08g02193 Chr08 89507903 89512417 +
Alju Alju10g2211 Chr10 43068031 43071845 -
Apr Apr2g0668 Chr2 8039028 8042743 +
Apr Apr5g0800 Chr5 11518406 11521175 -
Arst Arst7g01951 Chr7 33887620 33892256 -
Arst Arst7g01951 Chr7 33887620 33892256 -
Bisa Bisa02g2144 Chr02 49287616 49292328 -
Bva Bva09g01148 Chr09 6047935 6050668 +
Bva Bva07g01408 Chr07 14378637 14381759 -
Dere Dere07g2077 Chr07 34697241 34705914 +
Dod Dod10g0636 Chr10 19963748 19967655 -
Enph Enph8g1210 Chr8 20301627 20304869 +
Glsi Glsi04g2159 Chr04 73462082 73463209 -
Gma Gma08g01513 Chr08 13254211 13258567 -
Gma Gma15g02497 Chr15 52564513 52567915 +
Gso Gso8g1365 Chr8 13068698 13072927 -
Gso Gso8g1365 Chr8 13068698 13072927 -
Lal Lal1g1514 Chr1 17273530 17280463 +
Lal Lal20g0501 Chr20 4272624 4278118 +
Lal Lal11g1545 Chr11 18566930 18568865 +
Lapu Lapu5g01278 Chr5 25605642 25609050 +
Lasa Lasa1g04571 Chr1 754642697 754644980 -
Lele Lele30g0070 Chr30 777003 778586 +
Lele Lele32g1308 Chr32 14028530 14033708 -
Lja Lja3g3974 Chr3 78358072 78361667 +
Mal Mal4g2020 Chr4 43196816 43200847 +
Mal Mal5g2127 Chr5 50254993 50259381 -
Mepo Mepo6g02577 Chr6 35471530 35476071 -
Mepo Mepo1g03173 Chr1 36396576 36401207 +
Mesa Mesa5g01978 Chr5 31267891 31271938 +
Mesa Mesa29g03594 Chr29 58277982 58282384 +
Mibi Mibi07g2051 Chr07 43262243 43265859 -
Mtr Mtr2g2208 Chr2 33136428 33141227 -
Mtr Mtr8g1469 Chr8 18810864 18814971 -
Phco Phco10g00498 Chr10 5112869 5116109 -
Phco Phco9g01959 Chr9 44413751 44424480 -
Prci Prci6g2793 Chr6 40599783 40604122 -
Pste Pste3g01783 Chr3 11512220 11540087 -
Pte Pte15g01542 Chr15 12755206 12758235 -
Pte Pte1g01128 Chr1 30613167 30616370 -
Pvu Pvu5g0510 Chr5 5702444 5706126 -
Pvu Pvu11g1858 Chr11 45380928 45388352 -
Seca Seca4g06783 Chr4 141250107 141254146 +
Spst Spst5g01714 Chr5 52444541 52452535 -
Spst Spst11g00438 Chr11 25088571 25091985 +
Sto Sto4g1777 Chr4 18030873 18056851 +
Tpr Tpr7g3135 Chr7 38828176 38832871 -
Trre Trre11g03477 Chr11 47361505 47365611 +
Trre Trre15g01711 Chr15 13667104 13670238 -
Tsu Tsu02g03770 Chr02 42713402 42716261 -
Vian Vian5g00492 Chr5 14126002 14132126 +
Vimu Vimu4g01609 Chr4 17256105 17258964 -
Vimu Vimu5g00899 Chr5 12228200 12234448 +
Vivi Vivi7g00163 Chr7 8951012 8953454 -
Vvi Vvi19g1389 Chr19 23090087 23092112 +