Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma08g02180 . . . Gso8g1968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2141 . Mepo1g03160 . . . . . Mtr8g1482 . . . Phco9g01938 . . . . . . . . . . . . . Pvu11g1843 . Rops3g02218 . . . Spst11g00446 . . . . . Tpr7g1396 . . . Tsu08g01670 . Vian5g00502 . . . Vimu5g00912 . . . . . .
Vvi19g1374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma08g02179 Gma15g02029 . . Gso8g1967 Gso8g1967 . . Lal9g0601 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1375 . . . . . . Aed1g0277 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g1930 . . . . . . . . . . . . . . . . . .
Vvi19g1376 . . . . Adu07g01565 . . . . . . . . . . . . . . . Arst7g01988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo6g02616 . Mesa5g01929 . . . . . . . Phco10g00504 . . . . . . . . . . . Pumo4g02911 . Pvu5g0518 . Rops7g01770 . Seca4g06753 . . . . . . . . . . . . . Vian11g01396 . . . Vimu4g01619 . Viun1g00822 . . . . .
Vvi19g1377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma15g02031 . . . . . . . . Lal2g0689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1379 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma08g02177 Gma15g02032 . . Gso8g1966 Gso8g1966 . . . . . . . Lal11g1539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1370 Chr19 22836907 22837275 +
Vvi Vvi19g1371 Chr19 22843767 22847370 +
Vvi Vvi19g1372 Chr19 22847709 22848066 +
Vvi Vvi19g1373 Chr19 22854358 22885628 +
Gma Gma08g02180 Chr08 20617005 20675142 -
Gso Gso8g1968 Chr8 20208550 20279098 -
Mal Mal5g2141 Chr5 50665293 50681694 +
Mepo Mepo1g03160 Chr1 36215470 36229287 -
Mtr Mtr8g1482 Chr8 19173949 19188120 +
Phco Phco9g01938 Chr9 44245652 44247391 -
Pvu Pvu11g1843 Chr11 45252346 45271824 -
Rops Rops3g02218 Chr3 43985660 44034026 -
Spst Spst11g00446 Chr11 25183455 25184011 +
Tpr Tpr7g1396 Chr7 14991820 15007147 -
Tsu Tsu08g01670 Chr08 19970695 19983660 +
Vian Vian5g00502 Chr5 14579109 14607330 +
Vimu Vimu5g00912 Chr5 12687542 12696576 +
Vvi Vvi19g1374 Chr19 22887412 22896568 -
Gma Gma08g02179 Chr08 20571780 20577216 +
Gma Gma15g02029 Chr15 34939256 34947760 -
Gso Gso8g1967 Chr8 20192174 20197522 +
Gso Gso8g1967 Chr8 20192174 20197522 +
Lal Lal9g0601 Chr9 4043836 4045781 +
Vvi Vvi19g1375 Chr19 22897111 22904725 +
Aed Aed1g0277 Chr1 4532713 4537371 +
Cca Cca10g01432 Chr10 21212402 21219617 -
Mtr Mtr2g2225 Chr2 33534883 33541137 -
Sto Sto7g1930 Chr7 24819258 24827319 +
Vvi Vvi19g1376 Chr19 22905776 22906585 -
Adu Adu07g01565 Chr07 37889017 37889721 -
Arst Arst7g01988 Chr7 36919096 36922152 +
Mepo Mepo6g02616 Chr6 36066753 36069455 -
Mesa Mesa5g01929 Chr5 30297070 30297867 +
Phco Phco10g00504 Chr10 5257542 5258357 +
Pumo Pumo4g02911 Chr4 56195603 56196418 -
Pvu Pvu5g0518 Chr5 5922000 5924714 +
Rops Rops7g01770 Chr7 27844640 27847555 +
Seca Seca4g06753 Chr4 139308917 139312050 +
Vian Vian11g01396 Chr11 23412606 23413418 +
Vimu Vimu4g01619 Chr4 17385827 17390402 +
Viun Viun1g00822 Chr1 10287672 10290515 -
Vvi Vvi19g1377 Chr19 22908555 22916345 -
Vvi Vvi19g1378 Chr19 22922082 22923674 +
Gma Gma15g02031 Chr15 35064795 35066411 +
Lal Lal2g0689 Chr2 4206652 4208199 -
Vvi Vvi19g1379 Chr19 22924959 22931674 -
Gma Gma08g02177 Chr08 20540217 20550389 +
Gma Gma15g02032 Chr15 35074940 35083666 -
Gso Gso8g1966 Chr8 20160947 20171485 +
Gso Gso8g1966 Chr8 20160947 20171485 +
Lal Lal11g1539 Chr11 18525254 18531906 +
Psa Psa1g0343 Chr1 18966808 18974397 +