Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1210 . . . . . . Aed1g0341 . Aev10g1113 . Ahy18g1798 . Aip08g02031 . . . Amo18g2355 . Apr2g0606 . Arst7g02650 . Bach13g00629 . . . . . . . Cca10g01345 . . . Dod10g0720 . . . . . . Gma15g02442 . . . . . . . Lal1g1558 . . . . . . . . . . . . Lasa1g04646 . . . . . . . . . . . Mal4g1877 . . . . . . . Mtr2g2309 . . . Phco10g00594 . . . . . . . . Pte15g01560 . . . . Pvu5g0600 . . . . . Spst5g01662 . Ssu8g1419 . Sto4g0764 . Tpr7g3199 . . . Tsu02g03905 . . . . . . . . . . . Vra5g2328 .
Vvi19g1211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1212 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g01411 . . . . . . . . . . . . Gma08g01516 . . . Gso8g1367 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1214 . . . . . . Aed1g0334 . . . . . . . . . . . Apr2g0609 . . . . Bach9g00990 . . . . . . Cca10g01352 . . . . . . . . . . Gma15g02444 . . . . . . Lal9g0593 . . . Lal1g0632 . . . . . . . . . . . . . . . . . . . . Lja3g4943 . . . . . . . . . . . . Phco10g00595 Phco9g01910 . . . . Pste3g01911 . Pte17g00221 . . . . . Pvu5g0601 Pvu11g1810 . . . . Spst5g01663 Spst11g00467 Ssu8g1421 . . . . . . . . . . . . . . Vimu5g00977 . . . . Vra5g2327 .
Vvi19g1215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1217 . . . . . . . . . . . . . . . . . . . Apr9g1920 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0767 . . . . . . . . . . . . . . . . . . .
Vvi19g1218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1219 . . . . . . . . . . . . . . . . . . Apr2g0617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1210 Chr19 19971012 19974133 -
Aed Aed1g0341 Chr1 5188553 5192589 +
Aev Aev10g1113 Chr10 14869052 14872333 +
Ahy Ahy18g1798 Chr18 65980273 65984442 -
Aip Aip08g02031 Chr08 63655707 63658896 -
Amo Amo18g2355 Chr18 76680259 76683912 -
Apr Apr2g0606 Chr2 7111984 7116531 -
Arst Arst7g02650 Chr7 66508460 66511705 -
Bach Bach13g00629 Chr13 11838268 11846954 +
Cca Cca10g01345 Chr10 18548844 18553516 -
Dod Dod10g0720 Chr10 21819042 21820856 +
Gma Gma15g02442 Chr15 51664250 51669605 -
Lal Lal1g1558 Chr1 17901238 17905136 +
Lasa Lasa1g04646 Chr1 763732759 763735681 -
Mal Mal4g1877 Chr4 35765272 35768304 -
Mtr Mtr2g2309 Chr2 34882590 34886051 +
Phco Phco10g00594 Chr10 6536254 6539131 -
Pte Pte15g01560 Chr15 13053440 13057146 -
Pvu Pvu5g0600 Chr5 7755781 7759975 -
Spst Spst5g01662 Chr5 51519896 51522764 -
Ssu Ssu8g1419 Chr8 27186173 27186886 -
Sto Sto4g0764 Chr4 5330812 5333178 -
Tpr Tpr7g3199 Chr7 39710660 39714071 +
Tsu Tsu02g03905 Chr02 45005109 45095866 +
Vra Vra5g2328 Chr5 30055325 30059270 +
Vvi Vvi19g1211 Chr19 20058633 20060060 +
Vvi Vvi19g1212 Chr19 20068990 20107211 +
Bva Bva07g01411 Chr07 14398011 14404596 +
Gma Gma08g01516 Chr08 13284471 13293794 +
Gso Gso8g1367 Chr8 13099835 13108094 +
Vvi Vvi19g1213 Chr19 20116068 20116169 +
Vvi Vvi19g1214 Chr19 20133041 20139511 -
Aed Aed1g0334 Chr1 5120435 5124221 +
Apr Apr2g0609 Chr2 7132816 7135190 -
Bach Bach9g00990 Chr9 7386222 7391011 -
Cca Cca10g01352 Chr10 18905580 18907820 -
Gma Gma15g02444 Chr15 51690535 51693070 -
Lal Lal9g0593 Chr9 3991259 3995707 +
Lal Lal1g0632 Chr1 4074747 4076824 +
Lja Lja3g4943 Chr3 91561794 91567072 +
Phco Phco10g00595 Chr10 6550447 6554863 -
Phco Phco9g01910 Chr9 43897118 43901138 +
Pste Pste3g01911 Chr3 12923189 12926079 +
Pte Pte17g00221 Chr17 2798207 2800833 +
Pvu Pvu5g0601 Chr5 7772417 7774978 -
Pvu Pvu11g1810 Chr11 44835253 44839701 +
Spst Spst5g01663 Chr5 51561810 51563581 -
Spst Spst11g00467 Chr11 25547695 25550394 -
Ssu Ssu8g1421 Chr8 27238957 27241538 -
Vimu Vimu5g00977 Chr5 14845303 14848342 -
Vra Vra5g2327 Chr5 30036109 30038770 -
Vvi Vvi19g1215 Chr19 20152212 20152848 +
Vvi Vvi19g1216 Chr19 20163017 20163598 +
Vvi Vvi19g1217 Chr19 20170778 20172315 +
Apr Apr9g1920 Chr9 27723337 27730176 +
Sto Sto4g0767 Chr4 5387352 5388954 -
Vvi Vvi19g1218 Chr19 20180115 20182812 -
Vvi Vvi19g1219 Chr19 20226011 20227553 +
Apr Apr2g0617 Chr2 7185769 7187996 -