Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1100 . . . . . . . . . . . . Aip08g01910 . . . . . . . . . . . . . Bva09g01045 Bva07g01510 . . . . . . Dod10g0774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1810 . . . . . . . Mtr2g2355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3271 . . . . . . . . . . . . . . . . .
Vvi19g1101 . . . . . . Aed1g0387 . . . . . . . . . . . Apr2g0562 . . . . . . . . . . . Cca10g01295 . . . . . . . . . . Gma15g02399 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3877 . Mal4g1811 . . . . . . . Mtr2g2354 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1361 . . Sto7g0064 Tpr7g3270 . . . Tsu02g04010 . . . . . . . . . . . . .
Vvi19g1102 . . . . . . Aed1g0386 . . . . . . . . . . . Apr2g0563 . . . . . . . Bva09g01046 Bva07g01508 . . Cca10g01296 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3878 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1103 . . . . . . Aed1g0381 . . . . . . . . . . . Apr2g0564 . . . . . . . . Bva07g01507 Car01g01863 . Cca10g01297 . . . . . . . . . . Gma15g02400 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3879 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1365 . . Sto7g0063 . . . . . . . . . . . . . . . . . .
Vvi19g1104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1105 . . . . . . Aed1g0380 . . . . . . . . . . . Apr2g0565 . . . . . . . Bva09g01047 Bva07g01505 . . Cca10g01298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1367 . . . . . . . . . . . . . . . . . . . . .
Vvi19g1106 . . . . . . . . . . Ahy18g1727 Ahy13g1869 Aip08g01921 Aip03g02071 . . Amo18g2186 . Apr2g0566 . . . . . . . . Bva07g01504 Car01g01862 . Cca10g01299 . . . Dod10g0773 . . . . . Gma08g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3881 . Mal4g1815 . . . . . . . Mtr2g2350 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1371 . . Sto7g0062 . . . . Tsu02g04008 . . . . . . . . . . . . .
Vvi19g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal20g0427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1109 . . . . . . . . Aev10g1151 . . Ahy13g1870 Aip08g01924 Aip03g02072 . . . Amo13g2357 Apr2g0568 . . . . . . . . Bva07g01501 Car01g01861 . . . . . . . . . . . Gma08g01606 Gma15g02402 . . Gso8g1446 Gso8g1446 . . . . Lal2g0661 Lal20g0428 . . . . . . . . . . . . . . . . . . . . Lja3g3882 . . . . . . . . . Mtr2g2349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g0060 . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1100 Chr19 16803108 16803919 +
Aip Aip08g01910 Chr08 51346194 51347491 -
Bva Bva09g01045 Chr09 5352939 5354029 +
Bva Bva07g01510 Chr07 14877739 14878905 -
Dod Dod10g0774 Chr10 22944267 22946023 +
Mal Mal4g1810 Chr4 34113602 34114818 +
Mtr Mtr2g2355 Chr2 35542325 35544233 -
Tpr Tpr7g3271 Chr7 40452656 40454973 -
Vvi Vvi19g1101 Chr19 16877044 16877916 +
Aed Aed1g0387 Chr1 5594894 5596028 +
Apr Apr2g0562 Chr2 6638770 6640444 +
Cca Cca10g01295 Chr10 17716010 17717242 +
Gma Gma15g02399 Chr15 51003640 51004900 +
Lja Lja3g3877 Chr3 76389618 76390728 +
Mal Mal4g1811 Chr4 34120078 34121559 +
Mtr Mtr2g2354 Chr2 35539175 35540449 -
Ssu Ssu8g1361 Chr8 26077445 26078667 +
Sto Sto7g0064 Chr7 536349 537100 +
Tpr Tpr7g3270 Chr7 40446721 40450340 -
Tsu Tsu02g04010 Chr02 46633463 46634850 -
Vvi Vvi19g1102 Chr19 16915246 16916036 -
Aed Aed1g0386 Chr1 5593002 5593976 +
Apr Apr2g0563 Chr2 6650531 6651289 +
Bva Bva09g01046 Chr09 5356904 5359437 +
Bva Bva07g01508 Chr07 14874022 14875110 -
Cca Cca10g01296 Chr10 17717722 17718994 -
Lja Lja3g3878 Chr3 76463543 76466054 +
Vvi Vvi19g1103 Chr19 17054558 17055364 -
Aed Aed1g0381 Chr1 5579013 5580643 -
Apr Apr2g0564 Chr2 6651625 6652836 -
Bva Bva07g01507 Chr07 14872358 14872729 -
Car Car01g01863 Chr01 42779272 42783087 -
Cca Cca10g01297 Chr10 17719784 17722127 -
Gma Gma15g02400 Chr15 51005037 51006307 -
Lja Lja3g3879 Chr3 76469140 76469919 +
Ssu Ssu8g1365 Chr8 26108722 26109537 -
Sto Sto7g0063 Chr7 530622 535112 +
Vvi Vvi19g1104 Chr19 17070455 17071030 -
Vvi Vvi19g1105 Chr19 17103973 17105373 +
Aed Aed1g0380 Chr1 5577215 5578516 +
Apr Apr2g0565 Chr2 6655140 6656045 -
Bva Bva09g01047 Chr09 5357747 5359809 -
Bva Bva07g01505 Chr07 14868126 14869074 +
Cca Cca10g01298 Chr10 17733353 17735497 -
Ssu Ssu8g1367 Chr8 26145197 26175295 -
Vvi Vvi19g1106 Chr19 17114099 17114848 +
Ahy Ahy18g1727 Chr18 52853235 52854844 -
Ahy Ahy13g1869 Chr13 31333139 31334274 -
Aip Aip08g01921 Chr08 51783770 51785439 -
Aip Aip03g02071 Chr03 30149812 30151056 -
Amo Amo18g2186 Chr18 63402617 63404306 -
Apr Apr2g0566 Chr2 6657565 6658924 -
Bva Bva07g01504 Chr07 14866896 14867772 +
Car Car01g01862 Chr01 42763187 42765115 -
Cca Cca10g01299 Chr10 17783175 17784733 -
Dod Dod10g0773 Chr10 22923656 22924937 +
Gma Gma08g01608 Chr08 14268859 14270396 +
Lja Lja3g3881 Chr3 76489958 76490741 +
Mal Mal4g1815 Chr4 34171821 34174806 -
Mtr Mtr2g2350 Chr2 35522966 35524872 +
Ssu Ssu8g1371 Chr8 26212781 26228454 -
Sto Sto7g0062 Chr7 527820 528170 +
Tsu Tsu02g04008 Chr02 46624373 46626003 +
Vvi Vvi19g1107 Chr19 17116246 17119317 -
Vvi Vvi19g1108 Chr19 17144702 17145136 -
Lal Lal20g0427 Chr20 3463957 3466322 -
Vvi Vvi19g1109 Chr19 17210328 17211134 +
Aev Aev10g1151 Chr10 15267098 15268614 +
Ahy Ahy13g1870 Chr13 31352738 31355322 -
Aip Aip08g01924 Chr08 51993540 51995858 -
Aip Aip03g02072 Chr03 30164860 30167398 -
Amo Amo13g2357 Chr13 40714206 40716795 -
Apr Apr2g0568 Chr2 6667135 6669576 -
Bva Bva07g01501 Chr07 14859458 14863021 +
Car Car01g01861 Chr01 42761094 42762503 -
Gma Gma08g01606 Chr08 14255515 14257571 -
Gma Gma15g02402 Chr15 51040971 51043365 -
Gso Gso8g1446 Chr8 14051359 14053210 -
Gso Gso8g1446 Chr8 14051359 14053210 -
Lal Lal2g0661 Chr2 3983467 3984557 -
Lal Lal20g0428 Chr20 3466805 3468109 -
Lja Lja3g3882 Chr3 76490980 76492254 -
Mtr Mtr2g2349 Chr2 35520835 35522359 +
Sto Sto7g0060 Chr7 519444 520210 +