Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1090 . . . . . . Aed1g0392 . Aev10g1158 . Ahy18g1713 . Aip08g01903 . . . Amo18g2162 . . Apr5g0846 . . . . . . . . . . Cca10g01290 . . . Dod10g0778 . . . . . . . . . . . . . Lal9g0575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr2g2359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3286 . . . Tsu02g04017 . . . . . . . . . . . . .
Vvi19g1091 . . . . . . . . Aev10g1154 . Ahy18g1716 . Aip08g01906 . . . Amo18g2166 . . . . . . . . . . . . . . . . . . . . . . . Gma08g01610 . . . Gso8g1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1094 . . . . . . Aed1g0390 . . . Ahy18g1717 . Aip08g01907 . . . Amo18g2167 . . . . . . . . . . Bva07g01514 . . Cca10g01292 . . . Dod10g0776 . . . . . . . . . . . . . Lal9g0576 . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1807 . . . . . . . Mtr2g2358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3274 . . . . . . . . . . . . . . . . .
Vvi19g1095 . . . . . . . . Aev10g1153 . Ahy18g1718 . Aip08g01908 . . . Amo18g2170 . . . . . . . . . . Bva07g01512 . . . . . . . . . . . . . Gma15g02396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1808 . . . . . . . Mtr2g2357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3273 . . . Tsu02g04013 . . . . . . . . . . . . .
Vvi19g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1099 . . . . . . Aed1g0388 . . . Ahy18g1719 . Aip08g01909 . . . . . . . . . . . . . . Bva07g01511 . . Cca10g01294 . . . Dod10g0775 . . . . . . Gma15g02397 . . . . . . Lal9g0577 . . . . . . . . . . . . . . . . . . . . . . . . . Mal4g1809 . . . . . . . Mtr2g2356 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g3272 . . . Tsu02g04011 . . . . . . . . . . . . .
   
Previous Page 2782 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1090 Chr19 16570483 16571825 +
Aed Aed1g0392 Chr1 5622429 5624297 -
Aev Aev10g1158 Chr10 15320823 15330298 -
Ahy Ahy18g1713 Chr18 51851492 51853533 +
Aip Aip08g01903 Chr08 50829430 50831560 +
Amo Amo18g2162 Chr18 61536894 61538951 +
Apr Apr5g0846 Chr5 12321277 12322797 -
Cca Cca10g01290 Chr10 17662507 17690836 +
Dod Dod10g0778 Chr10 22976547 22978605 -
Lal Lal9g0575 Chr9 3881306 3882417 -
Mtr Mtr2g2359 Chr2 35576537 35582436 -
Tpr Tpr7g3286 Chr7 40659718 40661892 -
Tsu Tsu02g04017 Chr02 46711994 46713317 -
Vvi Vvi19g1091 Chr19 16593532 16594995 +
Aev Aev10g1154 Chr10 15276259 15277555 -
Ahy Ahy18g1716 Chr18 51935825 51937734 +
Aip Aip08g01906 Chr08 50911742 50913005 +
Amo Amo18g2166 Chr18 61618381 61620194 +
Gma Gma08g01610 Chr08 14280795 14282468 -
Gso Gso8g1449 Chr8 14074666 14076196 -
Vvi Vvi19g1092 Chr19 16606386 16608320 +
Vvi Vvi19g1093 Chr19 16609679 16610200 +
Vvi Vvi19g1094 Chr19 16626495 16627784 +
Aed Aed1g0390 Chr1 5604286 5605980 -
Ahy Ahy18g1717 Chr18 52012807 52014335 +
Aip Aip08g01907 Chr08 50991373 50992998 +
Amo Amo18g2167 Chr18 61722231 61723841 +
Bva Bva07g01514 Chr07 14889344 14890220 -
Cca Cca10g01292 Chr10 17695770 17697336 -
Dod Dod10g0776 Chr10 22950464 22951335 -
Lal Lal9g0576 Chr9 3887613 3888947 +
Mal Mal4g1807 Chr4 34019658 34024057 +
Mtr Mtr2g2358 Chr2 35572995 35574835 -
Tpr Tpr7g3274 Chr7 40467392 40469408 -
Vvi Vvi19g1095 Chr19 16675740 16677050 -
Aev Aev10g1153 Chr10 15272768 15275160 -
Ahy Ahy18g1718 Chr18 52385171 52386482 +
Aip Aip08g01908 Chr08 51339686 51340964 +
Amo Amo18g2170 Chr18 62619771 62621051 -
Bva Bva07g01512 Chr07 14883626 14885215 -
Gma Gma15g02396 Chr15 50968936 50970624 +
Mal Mal4g1808 Chr4 34028668 34029812 +
Mtr Mtr2g2357 Chr2 35567317 35568652 -
Tpr Tpr7g3273 Chr7 40464921 40466117 -
Tsu Tsu02g04013 Chr02 46690346 46692154 -
Vvi Vvi19g1096 Chr19 16682417 16682656 +
Vvi Vvi19g1097 Chr19 16687888 16694431 +
Vvi Vvi19g1098 Chr19 16715010 16715412 +
Vvi Vvi19g1099 Chr19 16771499 16777158 +
Aed Aed1g0388 Chr1 5598757 5602727 +
Ahy Ahy18g1719 Chr18 52387686 52389448 -
Aip Aip08g01909 Chr08 51342169 51343887 -
Bva Bva07g01511 Chr07 14880032 14881145 -
Cca Cca10g01294 Chr10 17712209 17713705 -
Dod Dod10g0775 Chr10 22948796 22949573 +
Gma Gma15g02397 Chr15 50997355 50999526 +
Lal Lal9g0577 Chr9 3889575 3891543 -
Mal Mal4g1809 Chr4 34107169 34108475 +
Mtr Mtr2g2356 Chr2 35549355 35551499 -
Tpr Tpr7g3272 Chr7 40457242 40459610 -
Tsu Tsu02g04011 Chr02 46644774 46679397 -