Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1078 Acco01g3128 . Accr1g02776 . . . Aed1g0404 . . . . Ahy13g1867 . Aip03g02068 Alju02g0915 . . Amo13g2351 Apr2g0552 . . . . . Bisa12g0386 . Bva09g01034 Bva07g01522 Car01g01875 . Cca10g01280 . Dere08g0235 . . Dod03g1832 Enph3g0837 . Glsi14g0853 . Gma08g01621 Gma15g02383 . . Gso8g1460 Gso8g1460 . . Lal9g0573 Lal1g1573 . Lal20g0421 . . . . . . . . . . Lasa1g04727 . Lele09g0547 Lele10g0503 Lele11g0554 Lele12g0776 . . . . Lja3g3865 . Mal4g1792 . . . . . Mibi01g0812 . Mtr2g2372 . . . Phco10g00521 . Prci7g1639 . . . Pste3g02025 . Pte17g00260 . . . . . Pvu5g0533 . . . . . Spst5g01554 . Ssu8g1350 . . Sto7g0080 Tpr7g3294 . . . Tsu02g04035 . . . . . Vimu4g01638 . . . . . . .
Vvi19g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1070 Chr19 15855229 15855753 +
Vvi Vvi19g1071 Chr19 15950836 15951051 +
Vvi Vvi19g1072 Chr19 16043514 16044854 -
Vvi Vvi19g1073 Chr19 16057104 16059738 -
Vvi Vvi19g1074 Chr19 16085228 16095562 +
Vvi Vvi19g1075 Chr19 16127781 16129711 +
Vvi Vvi19g1076 Chr19 16132356 16136840 +
Vvi Vvi19g1077 Chr19 16143331 16146668 +
Vvi Vvi19g1078 Chr19 16296214 16309991 +
Acco Acco01g3128 Chr01 48788108 48791726 +
Accr Accr1g02776 Chr1 64664391 64668011 +
Aed Aed1g0404 Chr1 5743889 5750862 +
Ahy Ahy13g1867 Chr13 31228485 31233507 -
Aip Aip03g02068 Chr03 30036809 30041904 -
Alju Alju02g0915 Chr02 6868031 6871758 -
Amo Amo13g2351 Chr13 40587523 40591946 -
Apr Apr2g0552 Chr2 6444202 6450458 -
Bisa Bisa12g0386 Chr12 5388786 5393061 +
Bva Bva09g01034 Chr09 5280595 5284947 -
Bva Bva07g01522 Chr07 14951037 14955255 +
Car Car01g01875 Chr01 43005911 43011438 +
Cca Cca10g01280 Chr10 17422802 17429194 -
Dere Dere08g0235 Chr08 4360556 4364663 +
Dod Dod03g1832 Chr03 30780555 30786354 +
Enph Enph3g0837 Chr3 29685216 29691158 +
Glsi Glsi14g0853 Chr14 10096582 10101540 +
Gma Gma08g01621 Chr08 14437496 14443671 +
Gma Gma15g02383 Chr15 50670848 50677959 -
Gso Gso8g1460 Chr8 14226537 14233555 +
Gso Gso8g1460 Chr8 14226537 14233555 +
Lal Lal9g0573 Chr9 3866455 3872297 -
Lal Lal1g1573 Chr1 18110402 18115560 +
Lal Lal20g0421 Chr20 3379564 3384791 -
Lasa Lasa1g04727 Chr1 774198176 774202520 +
Lele Lele09g0547 Chr09 4116722 4120506 +
Lele Lele10g0503 Chr10 3618938 3622747 +
Lele Lele11g0554 Chr11 5481605 5485429 +
Lele Lele12g0776 Chr12 15825072 15829082 -
Lja Lja3g3865 Chr3 76123774 76132296 +
Mal Mal4g1792 Chr4 33258104 33263399 -
Mibi Mibi01g0812 Chr01 7973628 7977258 -
Mtr Mtr2g2372 Chr2 35790479 35796533 +
Phco Phco10g00521 Chr10 5525061 5531176 -
Prci Prci7g1639 Chr7 32052389 32056849 +
Pste Pste3g02025 Chr3 13861705 13867665 +
Pte Pte17g00260 Chr17 3453872 3457624 +
Pvu Pvu5g0533 Chr5 6353121 6359730 -
Spst Spst5g01554 Chr5 49272509 49279216 -
Ssu Ssu8g1350 Chr8 25532127 25539803 -
Sto Sto7g0080 Chr7 628853 633138 +
Tpr Tpr7g3294 Chr7 40823542 40828882 +
Tsu Tsu02g04035 Chr02 47010573 47015551 +
Vimu Vimu4g01638 Chr4 17670150 17676220 -
Vvi Vvi19g1079 Chr19 16325085 16325761 +