Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0143 . . . . Adu03g04342 . . . . Aev03g2311 . Ahy13g4284 . Aip03g04746 . . . . . Apr3g2114 Arst3g05740 . Bach11g00014 . . . . . Car06g01264 . . Cca09g01610 . . . Dod04g1834 . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02725 . Lasa7g03729 . . . . . . . . . . Lja4g4169 . . Mepo2g03651 . Mesa13g01523 . . . . . Phac2g02949 . Phco4g02218 . . . . Psa7g2040 . . . . . . Pumo6g01448 . Pvu2g1968 . . . Seca12g05420 . Spst3g00196 . . Ssu5g2104 . . . . Trre7g04241 . . . Vian1g02855 . Vifa6g01981 . Vimu11g01545 . Viun3g01977 . Vivi5g04760 . . .
Vvi1g0144 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4542 . . . . . . . Mtr1g1200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0147 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto13g0132 . . . . . . . . . . . . . . . . . . .
Vvi1g0148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto13g0133 . . . . . . . . . . . . . . . . . . .
Vvi1g0149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02819 . . . Psa7g2992 . Pste2g03323 . . . . . Pumo2g01509 . Pvu9g2485 . . . Seca6g03868 . Spst9g02976 . . . . . . . . . . . Vian4g00230 . . . Vimu10g00308 . Viun9g00288 . . . .
Vvi1g0150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 15 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0141 Chr1 1337871 1340100 +
Vvi Vvi1g0142 Chr1 1340900 1343491 -
Vvi Vvi1g0143 Chr1 1343707 1344663 -
Adu Adu03g04342 Chr03 132369800 132370762 +
Aev Aev03g2311 Chr03 24732181 24733143 +
Ahy Ahy13g4284 Chr13 142427986 142429394 +
Aip Aip03g04746 Chr03 131699177 131703418 +
Apr Apr3g2114 Chr3 37092521 37095031 +
Arst Arst3g05740 Chr3 131133715 131134987 +
Bach Bach11g00014 Chr11 135356 136630 -
Car Car06g01264 Chr06 12523277 12524801 +
Cca Cca09g01610 Chr09 39904502 39908377 +
Dod Dod04g1834 Chr04 41260866 41262310 +
Lapu Lapu3g02725 Chr3 49944512 49945691 -
Lasa Lasa7g03729 Chr7 611763569 611764531 +
Lja Lja4g4169 Chr4 75190274 75191747 +
Mepo Mepo2g03651 Chr2 45845686 45847127 +
Mesa Mesa13g01523 Chr13 18200740 18201246 -
Phac Phac2g02949 Chr2 31288869 31292932 -
Phco Phco4g02218 Chr4 42918396 42919358 -
Psa Psa7g2040 Chr7 149342891 149343751 -
Pumo Pumo6g01448 Chr6 19705423 19706853 -
Pvu Pvu2g1968 Chr2 34794453 34798247 -
Seca Seca12g05420 Chr12 144827895 144828857 +
Spst Spst3g00196 Chr3 3531599 3532561 -
Ssu Ssu5g2104 Chr5 61139735 61140697 +
Trre Trre7g04241 Chr7 50442582 50443544 +
Vian Vian1g02855 Chr1 44986879 44987841 -
Vifa Vifa6g01981 Chr6 732623557 732624519 -
Vimu Vimu11g01545 Chr11 18523134 18527801 +
Viun Viun3g01977 Chr3 15583550 15585226 +
Vivi Vivi5g04760 Chr5 146420878 146422164 -
Vvi Vvi1g0144 Chr1 1353272 1355728 +
Bva Bva08g01652 Chr08 8912836 8916395 -
Vvi Vvi1g0145 Chr1 1361876 1369297 +
Mal Mal1g4542 Chr1 105426918 105429724 +
Mtr Mtr1g1200 Chr1 14199557 14202787 -
Vvi Vvi1g0146 Chr1 1371915 1373123 -
Vvi Vvi1g0147 Chr1 1386743 1417321 +
Sto Sto13g0132 Chr13 1118706 1121434 -
Vvi Vvi1g0148 Chr1 1418527 1421978 +
Sto Sto13g0133 Chr13 1135603 1139738 +
Vvi Vvi1g0149 Chr1 1423243 1425168 -
Phco Phco7g02819 Chr7 47274511 47277457 +
Psa Psa7g2992 Chr7 217947632 217950280 +
Pste Pste2g03323 Chr2 33274194 33276766 -
Pumo Pumo2g01509 Chr2 23970423 23973046 -
Pvu Pvu9g2485 Chr9 35331618 35334740 +
Seca Seca6g03868 Chr6 106231509 106236491 +
Spst Spst9g02976 Chr9 63841068 63843724 +
Vian Vian4g00230 Chr4 2364370 2377035 -
Vimu Vimu10g00308 Chr10 2079722 2082748 -
Viun Viun9g00288 Chr9 1938797 1941471 -
Vvi Vvi1g0150 Chr1 1425483 1426277 +