Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0134 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g01142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g00174 . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01533 . . . . . Pste5g00248 . . . . . . . Pvu1g1370 . . . . . . . . . . . . . . . . . . . . . Vimu6g03062 . . . . . . .
Vvi1g0136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0137 . . . . Adu03g04345 . . . . Aev03g2312 . Ahy13g4286 . Aip03g04748 . . . Amo13g5341 . Apr3g2116 . . . . . . . . Car06g01258 . . . . . . Dod04g1837 . . . . . . Gma08g00808 . . . . . . . . . . . . . . . . . Lapu3g02724 . Lasa7g03732 . . . . . . . . . . Lja4g4172 . . Mepo2g03653 . Mesa13g01521 . . . . . Phac2g02948 . Phco4g02217 . . . . Psa7g4102 Pste3g02325 . . . . . Pumo6g01443 . Pvu2g1967 . Rops2g01568 . . . . . . . . . . . . . . . Vian1g02854 . Vifa6g01976 . Vimu11g01549 . Viun3g01979 . . . . .
Vvi1g0138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0140 . . . . . Adu04g01128 . . . . . . . . . . . . . . . Arst4g01559 . . . . . . . . . Cca09g01613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g00519 . Lasa1g01701 . . . . . . . . . . . . . Mepo6g01589 . Mesa5g03009 . . . . . Phac9g03548 . . . . . . . Pste2g03293 . . . . . Pumo2g01489 . Pvu9g2492 . Rops11g01643 . . . Spst9g02988 . Ssu5g2108 Sto13g0126 . . . . Trre3g02086 . . . Vian4g00207 . Vifa1g09108 . Vimu10g00288 . Viun9g00263 . Vivi4g02540 . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0131 Chr1 1241082 1242515 -
Vvi Vvi1g0132 Chr1 1242559 1244964 -
Vvi Vvi1g0133 Chr1 1245323 1245943 +
Vvi Vvi1g0134 Chr1 1248360 1254947 -
Vvi Vvi1g0135 Chr1 1257420 1261050 -
Car Car02g01142 Chr02 33298019 33299556 +
Lapu Lapu1g00174 Chr1 7524876 7527990 +
Phco Phco2g01533 Chr2 45340062 45342029 -
Pste Pste5g00248 Chr5 1756567 1759264 -
Pvu Pvu1g1370 Chr1 37366238 37368890 -
Vimu Vimu6g03062 Chr6 26934970 26938105 +
Vvi Vvi1g0136 Chr1 1270143 1270559 +
Vvi Vvi1g0137 Chr1 1273069 1291735 -
Adu Adu03g04345 Chr03 132384717 132395611 +
Aev Aev03g2312 Chr03 24736994 24756065 +
Ahy Ahy13g4286 Chr13 142442119 142455049 +
Aip Aip03g04748 Chr03 131715168 131726398 +
Amo Amo13g5341 Chr13 153557410 153570317 +
Apr Apr3g2116 Chr3 37109329 37130020 +
Car Car06g01258 Chr06 12463676 12478472 -
Dod Dod04g1837 Chr04 41294113 41295627 +
Gma Gma08g00808 Chr08 6627436 6646865 +
Lapu Lapu3g02724 Chr3 49910957 49931813 -
Lasa Lasa7g03732 Chr7 611860211 611875844 +
Lja Lja4g4172 Chr4 75223052 75240413 +
Mepo Mepo2g03653 Chr2 45859396 45874379 +
Mesa Mesa13g01521 Chr13 18170964 18185274 -
Phac Phac2g02948 Chr2 31231949 31254742 -
Phco Phco4g02217 Chr4 42852235 42873740 -
Psa Psa7g4102 Chr7 335831301 335833398 -
Pste Pste3g02325 Chr3 16425524 16437619 +
Pumo Pumo6g01443 Chr6 19663072 19670417 -
Pvu Pvu2g1967 Chr2 34738077 34758793 -
Rops Rops2g01568 Chr2 23239486 23251698 -
Vian Vian1g02854 Chr1 44910277 44928511 -
Vifa Vifa6g01976 Chr6 731338522 731354035 -
Vimu Vimu11g01549 Chr11 18620659 18634830 +
Viun Viun3g01979 Chr3 15623042 15643257 +
Vvi Vvi1g0138 Chr1 1305065 1315182 +
Vvi Vvi1g0139 Chr1 1315728 1316003 -
Vvi Vvi1g0140 Chr1 1316104 1325327 -
Adu Adu04g01128 Chr04 22287839 22292438 +
Arst Arst4g01559 Chr4 22309501 22314536 +
Cca Cca09g01613 Chr09 39958819 39969902 -
Lapu Lapu9g00519 Chr9 5922726 5929681 -
Lasa Lasa1g01701 Chr1 153694433 153697688 -
Mepo Mepo6g01589 Chr6 17445678 17451050 +
Mesa Mesa5g03009 Chr5 54715966 54721108 -
Phac Phac9g03548 Chr9 34692767 34696769 +
Pste Pste2g03293 Chr2 32834580 32842159 +
Pumo Pumo2g01489 Chr2 22201392 22212287 +
Pvu Pvu9g2492 Chr9 35442757 35450034 -
Rops Rops11g01643 Chr11 25013952 25026227 +
Spst Spst9g02988 Chr9 64020102 64025853 -
Ssu Ssu5g2108 Chr5 61232256 61242127 -
Sto Sto13g0126 Chr13 1068352 1075206 -
Trre Trre3g02086 Chr3 18441206 18445200 +
Vian Vian4g00207 Chr4 1918919 1922288 +
Vifa Vifa1g09108 Chr1 1442763651 1442766794 -
Vimu Vimu10g00288 Chr10 1853226 1856553 +
Viun Viun9g00263 Chr9 1701365 1705996 +
Vivi Vivi4g02540 Chr4 123519958 123523594 -
Adu Adu03g04345 Chr03 132384717 132395611 +
Lapu Lapu3g02724 Chr3 49910957 49931813 -
Lasa Lasa7g03732 Chr7 611860211 611875844 +
Mepo Mepo2g03653 Chr2 45859396 45874379 +
Mesa Mesa13g01521 Chr13 18170964 18185274 -
Phac Phac2g02948 Chr2 31231949 31254742 -
Phco Phco4g02217 Chr4 42852235 42873740 -
Pste Pste3g02325 Chr3 16425524 16437619 +
Pumo Pumo6g01443 Chr6 19663072 19670417 -
Pvu Pvu2g1967 Chr2 34738077 34758793 -
Rops Rops2g01568 Chr2 23239486 23251698 -
Vian Vian1g02854 Chr1 44910277 44928511 -
Vifa Vifa6g01976 Chr6 731338522 731354035 -
Vimu Vimu11g01549 Chr11 18620659 18634830 +
Viun Viun3g01979 Chr3 15623042 15643257 +
Car Car02g01142 Chr02 33298019 33299556 +