Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2068 Acco08g1834 . Adu10g02825 . . Ahy20g3124 Ahy10g2564 Aip10g03532 Alju10g1794 . . . . . Bisa02g2502 . . Cca04g01790 . . . Glsi04g1789 . . . . . . . . . . . Lasa4g01793 . . . . . . . . . . . Phco9g02120 Prci6g2182 . Pste1g00564 Pumo10g02812 Rops3g02565 Seca4g09774 Spst11g00352 Ssu2g0287 Sto4g2382 . . . Vian5g00172 . Vimu5g00302 Viun11g00252 . .
Pvu11g2069 . . . Aed4g1464 . . . . Alju10g1796 . . Apr5g0895 . . . . . . . . . . Gma13g01688 . . . . . . . . . . Lasa4g01792 . . . . . . . . . . . . Prci6g2184 . Pste1g04390 . . . . . Sto4g2379 . . . . . Vimu5g00301 . . .
Pvu11g2070 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2071 . . . . . . . . . . . . . . Bisa02g2506 Bva07g01098 . . . . . . . . . . . . . . . . . Lasa4g01791 . . . . . . . . . . . Phco9g02121 Prci6g2185 . . . . . Spst11g00353 . Sto4g2378 . . . . . Vimu5g00299 . . .
Pvu11g2072 . . . Aed4g1465 . . . . Alju10g1797 . . Apr5g0896 . . . Bva07g01100 . . . . . . Gma13g01689 . . . . . . . . . . Lasa4g01790 . . . . . . . . . . . . Prci6g2186 . . . . . Spst11g00354 . Sto4g2377 . . . . . Vimu5g00298 . . .
Pvu11g2073 . . . . . . . . . . . . . . . Bva07g01101 . . Dere07g1775 . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02122 Prci6g2190 . . . . . Spst11g00355 . Sto4g2374 . . . . . Vimu5g00297 . . .
Pvu11g2074 . . . Aed4g1466 . . . . Alju10g1799 . . Apr5g0897 . . . Bva07g01104 . . Dere07g1779 . . . Gma13g01690 . . . . . . . . . . . . . . . . . . . . . . . Prci6g2191 . Pste1g00545 . . . Spst11g00356 . Sto4g2373 . . . . . Vimu5g00296 . . .
Pvu11g2075 . . . Aed4g1467 . . . . . . . . . . . Bva07g01105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02123 . . . . . . Spst11g00357 Ssu2g0284 . . . . . . Vimu5g00293 . . .
Pvu11g2076 . . . . . . . . Alju10g1800 . . . . . . Bva07g01106 . . Dere07g1785 . . . . . . . . . . . . . . . . . . . . . Mepo1g03396 . . Mtr8g1272 . . Prci6g2192 . . . . . Spst11g00358 . Sto4g2369 . . . . . Vimu5g00292 . . .
Pvu11g2077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02124 . . . . . . Spst11g00361 . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Cca Cca04g01790 Chr04 32656503 32657717 -
Pumo Pumo10g02812 Chr10 55478852 55479969 +
Rops Rops3g02565 Chr3 53816196 53817466 -
Seca Seca4g09774 Chr4 229638449 229639498 -
Vian Vian5g00172 Chr5 3470301 3471293 +
Viun Viun11g00252 Chr11 2039870 2057641 +
Spst Spst11g00352 Chr11 18233935 18234825 -
Pvu Pvu11g2068 Chr11 47635067 47636131 +
Acco Acco08g1834 Chr08 30163887 30164894 -
Adu Adu10g02825 Chr10 104828142 104829247 -
Ahy Ahy20g3124 Chr20 141879418 141880706 -
Ahy Ahy10g2564 Chr10 115128323 115129609 -
Aip Aip10g03532 Chr10 133746177 133747272 -
Alju Alju10g1794 Chr10 33727273 33728301 -
Bisa Bisa02g2502 Chr02 63062138 63063147 -
Cca Cca04g01790 Chr04 32656503 32657717 -
Glsi Glsi04g1789 Chr04 65748123 65749043 -
Lasa Lasa4g01793 Chr4 357771642 357772637 -
Phco Phco9g02120 Chr9 46471421 46472401 -
Prci Prci6g2182 Chr6 29713841 29719670 -
Pste Pste1g00564 Chr1 1824960 1825955 +
Pumo Pumo10g02812 Chr10 55478852 55479969 +
Rops Rops3g02565 Chr3 53816196 53817466 -
Seca Seca4g09774 Chr4 229638449 229639498 -
Spst Spst11g00352 Chr11 18233935 18234825 -
Ssu Ssu2g0287 Chr2 17666491 17668317 -
Sto Sto4g2382 Chr4 25298170 25301817 +
Vian Vian5g00172 Chr5 3470301 3471293 +
Vimu Vimu5g00302 Chr5 2847654 2848643 +
Viun Viun11g00252 Chr11 2039870 2057641 +
Pvu Pvu11g2069 Chr11 47640132 47641179 +
Aed Aed4g1464 Chr4 19201863 19203126 +
Alju Alju10g1796 Chr10 33823599 33823997 -
Apr Apr5g0895 Chr5 13132465 13133442 +
Gma Gma13g01688 Chr13 31820768 31822123 -
Lasa Lasa4g01792 Chr4 357484376 357485359 -
Prci Prci6g2184 Chr6 29760828 29761561 -
Pste Pste1g04390 Chr1 30236566 30237915 +
Sto Sto4g2379 Chr4 25273871 25276725 +
Vimu Vimu5g00301 Chr5 2812385 2813365 +
Pvu Pvu11g2070 Chr11 47645296 47648762 +
Gso Gso11g2236 Chr11 38073777 38078938 -
Pvu Pvu11g2071 Chr11 47663179 47664159 +
Bisa Bisa02g2506 Chr02 63241352 63242377 -
Bva Bva07g01098 Chr07 12424973 12426250 +
Lasa Lasa4g01791 Chr4 357316596 357317606 -
Phco Phco9g02121 Chr9 46474383 46475414 +
Prci Prci6g2185 Chr6 29778855 29780707 -
Spst Spst11g00353 Chr11 18302930 18304179 -
Sto Sto4g2378 Chr4 25233296 25234345 +
Vimu Vimu5g00299 Chr5 2787055 2788035 -
Pvu Pvu11g2072 Chr11 47680434 47681461 +
Aed Aed4g1465 Chr4 19223300 19224148 +
Alju Alju10g1797 Chr10 33868371 33868769 -
Apr Apr5g0896 Chr5 13198552 13199736 +
Bva Bva07g01100 Chr07 12439731 12440804 +
Gma Gma13g01689 Chr13 31831095 31832337 +
Lasa Lasa4g01790 Chr4 357316596 357369493 -
Prci Prci6g2186 Chr6 29783321 29785649 -
Spst Spst11g00354 Chr11 18365176 18367251 -
Sto Sto4g2377 Chr4 25197555 25230074 +
Vimu Vimu5g00298 Chr5 2777235 2782390 -
Pvu Pvu11g2073 Chr11 47687392 47688531 +
Bva Bva07g01101 Chr07 12451490 12452254 +
Dere Dere07g1775 Chr07 28664517 28665110 -
Phco Phco9g02122 Chr9 46481719 46482096 +
Prci Prci6g2190 Chr6 29828442 29829808 -
Spst Spst11g00355 Chr11 18367276 18367659 -
Sto Sto4g2374 Chr4 25111649 25162843 -
Vimu Vimu5g00297 Chr5 2774492 2775058 -
Pvu Pvu11g2074 Chr11 47702612 47703592 +
Aed Aed4g1466 Chr4 19236111 19237124 +
Alju Alju10g1799 Chr10 33967681 33968817 -
Apr Apr5g0897 Chr5 13241270 13272307 -
Bva Bva07g01104 Chr07 12466381 12467610 +
Dere Dere07g1779 Chr07 28806429 28807370 -
Gma Gma13g01690 Chr13 31836399 31836746 -
Prci Prci6g2191 Chr6 29869765 29870932 +
Pste Pste1g00545 Chr1 1750433 1751461 +
Spst Spst11g00356 Chr11 18405867 18406114 +
Sto Sto4g2373 Chr4 25106572 25107612 -
Vimu Vimu5g00296 Chr5 2764572 2765552 -
Pvu Pvu11g2075 Chr11 47709588 47710226 +
Aed Aed4g1467 Chr4 19239697 19240140 -
Bva Bva07g01105 Chr07 12474097 12475354 +
Phco Phco9g02123 Chr9 46494548 46495528 +
Spst Spst11g00357 Chr11 18416003 18416440 +
Ssu Ssu2g0284 Chr2 17600961 17602253 -
Vimu Vimu5g00293 Chr5 2715063 2720067 -
Pvu Pvu11g2076 Chr11 47715501 47715818 +
Alju Alju10g1800 Chr10 34140879 34142216 -
Bva Bva07g01106 Chr07 12476495 12477721 +
Dere Dere07g1785 Chr07 28930438 28930911 -
Mepo Mepo1g03396 Chr1 39311013 39312069 +
Mtr Mtr8g1272 Chr8 15587902 15589191 -
Prci Prci6g2192 Chr6 29938342 29939657 +
Spst Spst11g00358 Chr11 18662437 18663116 -
Sto Sto4g2369 Chr4 25069347 25070354 +
Vimu Vimu5g00292 Chr5 2712356 2713336 +
Pvu Pvu11g2077 Chr11 47724328 47725408 +
Phco Phco9g02124 Chr9 46507000 46508010 +
Spst Spst11g00361 Chr11 18999789 19000149 -