Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00234 . . . . . . . . . . . . . . .
Pvu11g2061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2063 . . . . . . Ahy3g0917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00232 . . . . . . . . . . . . . . .
Pvu11g2064 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2065 . . . . . Ahy20g2980 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2067 . . . . . . . . . . . . . . . . . . . Dod09g0704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2058 Chr11 47479168 47483321 +
Pvu Pvu11g2059 Chr11 47486431 47490179 +
Pvu Pvu11g2060 Chr11 47499786 47503788 +
Pste Pste1g00234 Chr1 826055 826958 -
Pvu Pvu11g2061 Chr11 47507265 47510054 +
Pvu Pvu11g2062 Chr11 47511788 47511888 +
Pvu Pvu11g2063 Chr11 47514128 47514833 +
Ahy Ahy3g0917 Chr3 10469509 10470714 +
Pste Pste1g00232 Chr1 819244 820104 -
Pvu Pvu11g2064 Chr11 47518509 47519726 -
Pvu Pvu11g2065 Chr11 47531285 47536398 +
Ahy Ahy20g2980 Chr20 140540279 140546365 -
Pvu Pvu11g2066 Chr11 47554654 47559162 -
Pvu Pvu11g2067 Chr11 47578343 47583306 -
Dod Dod09g0704 Chr09 15275699 15280124 +
Dod Dod09g0704 Chr09 15275699 15280124 +