Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1978 . . . Aed4g1424 . . . . . . . Apr5g0879 . . . Bva07g01052 Car07g02452 Cca04g01740 . . Enph8g1506 . Gma13g01656 Gma15g02154 Gso15g1891 Gso11g2209 . Lal2g0737 . . . . . . . . . . . Mal5g1908 . . . Mtr8g1324 . . . . . . . . . Ssu2g0343 Sto4g2422 Tpr7g1544 . Tsu08g01512 . . . . . .
Pvu11g1979 . . . Aed4g1427 . . . . . . . . . . . . . Cca04g01739 . . . . Gma13g01657 Gma15g02159 . Gso11g2210 . . . . . . . . . . . . . . . . . . . Phco9g02065 . . Pste1g00894 Pumo10g02762 . . Spst11g00021 Ssu2g0341 . . . . . . Vimu5g01022 . . .
Pvu11g1980 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1982 . . . Aed4g1429 . . . . . . . . . . . . . Cca04g01738 . . . . Gma13g01658 Gma15g02160 Gso15g1892 Gso11g2211 . . . . . . . . . . . . . . . . . . . Phco9g02066 . . Pste1g00890 Pumo10g02764 . . Spst11g00020 Ssu2g0340 . . . . . . Vimu5g01024 . . .
Pvu11g1983 . . . Aed4g1430 . . . . . . . . . . . . . Cca04g01736 . . . . Gma13g01659 . . Gso11g2212 . . . . . . . . . . . . . . . . . . . Phco9g02067 . . Pste1g00886 Pumo10g02766 . . . Ssu2g0339 . . . . . . Vimu5g01025 . . .
Pvu11g1984 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02070 . . . . . . . . . . . . . . . . . .
Pvu11g1985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1978 Chr11 46701010 46709778 -
Aed Aed4g1424 Chr4 18677651 18682056 -
Apr Apr5g0879 Chr5 12879160 12888643 -
Bva Bva07g01052 Chr07 12123028 12129510 -
Car Car07g02452 Chr07 45637923 45645785 +
Cca Cca04g01740 Chr04 30351404 30373779 +
Enph Enph8g1506 Chr8 26625076 26631530 +
Gma Gma13g01656 Chr13 31401080 31413516 -
Gma Gma15g02154 Chr15 43647708 43659614 -
Gso Gso15g1891 Chr15 41164660 41176858 -
Gso Gso11g2209 Chr11 37730619 37743145 -
Lal Lal2g0737 Chr2 4644398 4655113 -
Mal Mal5g1908 Chr5 40644335 40653224 +
Mtr Mtr8g1324 Chr8 16323797 16330807 +
Ssu Ssu2g0343 Chr2 22079935 22092381 +
Sto Sto4g2422 Chr4 25618552 25623027 +
Tpr Tpr7g1544 Chr7 17366278 17368601 -
Tsu Tsu08g01512 Chr08 17647838 17654808 +
Pvu Pvu11g1979 Chr11 46720263 46729516 -
Aed Aed4g1427 Chr4 18754989 18767601 -
Cca Cca04g01739 Chr04 30312994 30327414 +
Gma Gma13g01657 Chr13 31418061 31436530 -
Gma Gma15g02159 Chr15 43941148 43941447 -
Gso Gso11g2210 Chr11 37747285 37759882 -
Phco Phco9g02065 Chr9 45677058 45686825 -
Pste Pste1g00894 Chr1 2768192 2781117 +
Pumo Pumo10g02762 Chr10 52161146 52164990 -
Spst Spst11g00021 Chr11 341114 351745 +
Ssu Ssu2g0341 Chr2 22062491 22072739 +
Vimu Vimu5g01022 Chr5 16407364 16420316 -
Pvu Pvu11g1980 Chr11 46732185 46732233 +
Pvu Pvu11g1981 Chr11 46733220 46733413 +
Pvu Pvu11g1982 Chr11 46743546 46750687 +
Aed Aed4g1429 Chr4 18799157 18805212 +
Cca Cca04g01738 Chr04 30281949 30289616 -
Gma Gma13g01658 Chr13 31442689 31450906 +
Gma Gma15g02160 Chr15 44025817 44030770 +
Gso Gso15g1892 Chr15 41479881 41485503 +
Gso Gso11g2211 Chr11 37765932 37774062 +
Phco Phco9g02066 Chr9 45691064 45696721 +
Pste Pste1g00890 Chr1 2743159 2748160 -
Pumo Pumo10g02764 Chr10 52178742 52185802 +
Spst Spst11g00020 Chr11 333041 339218 -
Ssu Ssu2g0340 Chr2 22012914 22022746 -
Vimu Vimu5g01024 Chr5 16483606 16486945 +
Pvu Pvu11g1983 Chr11 46752108 46754735 +
Aed Aed4g1430 Chr4 18807468 18809962 +
Cca Cca04g01736 Chr04 30170638 30174672 -
Gma Gma13g01659 Chr13 31455448 31459598 +
Gso Gso11g2212 Chr11 37778552 37782579 +
Phco Phco9g02067 Chr9 45700078 45702807 +
Pste Pste1g00886 Chr1 2733023 2735500 -
Pumo Pumo10g02766 Chr10 52201914 52203014 +
Ssu Ssu2g0339 Chr2 21997805 22000846 -
Vimu Vimu5g01025 Chr5 16492996 16494823 +
Pvu Pvu11g1984 Chr11 46763139 46764194 +
Phco Phco9g02070 Chr9 45728808 45732217 -
Pvu Pvu11g1985 Chr11 46767572 46767709 +
Pvu Pvu11g1986 Chr11 46772410 46773113 -
Pvu Pvu11g1987 Chr11 46774728 46774800 -