Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1968 . . . Aed4g1416 . . . . . . . Apr5g0876 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02055 . . Pste1g00608 . . . . Ssu2g0348 . . . . . . . . . .
Pvu11g1969 . . . Aed4g1417 . . . . . . . . . . . . . . . . . . Gma13g01652 Gma15g02151 . Gso11g2203 . . . . . . . . . . . . . . . . . . . Phco9g02056 . . Pste1g00976 . . . Spst11g00029 Ssu2g0347 . . . . . . Vimu5g01000 . . .
Pvu11g1970 . . . . Aev08g1312 . . . . . . . . Bach9g01332 . Bva07g01047 Car07g02443 . . . . . . . Gso15g1888 . . . . . Lan8g1314 . . . . . . . . . . . . Mtr8g1334 Phac11g02489 Phco9g02057 . Psa4g3336 . . . . Spst11g00027 Ssu2g0346 . Tpr7g1536 Trre15g01582 . . . Vimu5g01003 . . .
Pvu11g1971 . . . Aed4g1418 . . . . . . . Apr5g0877 . . . . . . . . . . Gma13g01653 Gma15g02152 . Gso11g2204 . . . . . . . . . . . . . Mal5g1914 Mepo1g03326 Mesa29g03801 . Mtr8g1332 Phac11g02490 Phco9g02058 . Psa4g3337 . . . . Spst11g00026 . . Tpr7g1537 Trre15g01581 Tsu08g01517 . . Vimu5g01004 . Vivi7g04888 .
Pvu11g1972 . . . Aed4g1419 . . . . . . . . . . . . Car07g02445 . . . . . . . . Gso11g2205 . . . . . . . . . . . . . . Mepo1g03327 Mesa29g03802 . Mtr8g1331 . Phco9g02059 . . . . . . Spst11g00025 . . Tpr7g1538 . Tsu08g01515 . . Vimu5g01007 . . .
Pvu11g1973 . . . Aed4g1421 . Ahy20g3098 . Aip10g03506 . . . . . . . . Car07g02446 Cca04g01743 . . . . Gma13g01654 . . Gso11g2206 . . . . . . . Lasa4g01268 . . . . . Mal5g1913 Mepo1g03329 Mesa29g03803 . Mtr8g1330 . Phco9g02060 . . Pste1g00959 . Rops3g02484 Seca4g07610 Spst11g00024 . . Tpr7g1539 Trre15g01580 Tsu08g01514 Vian5g00547 . Vimu5g01011 Viun11g00369 Vivi7g04886 .
Pvu11g1974 . . Adu10g02802 Aed4g1422 . Ahy20g3099 Ahy10g2537 Aip10g03507 . . . . . . . . Car07g02447 . . . . . . . . Gso11g2207 Lal1g0665 Lal2g0736 . . . Lan13g0665 . . . . . . . . Mepo1g03330 Mesa29g03804 . Mtr8g1329 . Phco9g02061 . . Pste1g00916 . . . . . . Tpr7g1541 . . . . . . . .
Pvu11g1975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1977 . Accr1g02282 Adu10g02803 Aed4g1423 . Ahy20g3100 Ahy10g2538 Aip10g03508 Alju10g1732 . . Apr5g0878 . Bach9g01330 Bisa02g2459 Bva07g01050 Car07g02448 Cca04g01741 Dere07g1470 . Enph8g1509 Glsi04g1739 Gma13g01655 Gma15g02153 Gso15g1889 Gso11g2208 . . . . . . . Lasa4g01267 . . . Lele32g1095 . Mal5g1911 Mepo1g03331 . Mibi07g1659 Mtr8g1328 . Phco9g02063 . . Pste1g00912 Pumo10g02758 . . Spst11g00023 Ssu2g0344 Sto4g2424 Tpr7g1542 Trre15g01579 Tsu08g01513 . . . . Vivi7g04885 .
   
Previous Page 2772 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu10g02802 Chr10 104612104 104628537 +
Aip Aip10g03507 Chr10 133518389 133540309 +
Accr Accr1g02282 Chr1 57660742 57662733 -
Adu Adu10g02803 Chr10 104629784 104633673 -
Aip Aip10g03508 Chr10 133545364 133549270 -
Pste Pste1g00608 Chr1 1977266 1979788 -
Cca Cca04g01743 Chr04 30509967 30516758 -
Rops Rops3g02484 Chr3 51281641 51288436 +
Seca Seca4g07610 Chr4 173528828 173534914 -
Vian Vian5g00547 Chr5 19272163 19286649 +
Vimu Vimu5g01004 Chr5 15961170 15967060 +
Viun Viun11g00369 Chr11 3206147 3211540 +
Vimu Vimu5g01003 Chr5 15911543 15916386 -
Pvu Pvu11g1968 Chr11 46602559 46604476 +
Aed Aed4g1416 Chr4 18556839 18557457 -
Apr Apr5g0876 Chr5 12853552 12856168 -
Phco Phco9g02055 Chr9 45549423 45551107 +
Pste Pste1g00608 Chr1 1977266 1979788 -
Ssu Ssu2g0348 Chr2 22406792 22433504 +
Pvu Pvu11g1969 Chr11 46605452 46610479 -
Aed Aed4g1417 Chr4 18560462 18564165 -
Gma Gma13g01652 Chr13 31335673 31339606 -
Gma Gma15g02151 Chr15 43568361 43570980 -
Gso Gso11g2203 Chr11 37666062 37670071 -
Phco Phco9g02056 Chr9 45552937 45557907 -
Pste Pste1g00976 Chr1 3077896 3083085 +
Spst Spst11g00029 Chr11 548640 556194 +
Ssu Ssu2g0347 Chr2 22384751 22390796 +
Vimu Vimu5g01000 Chr5 15677043 15678392 -
Pvu Pvu11g1970 Chr11 46613124 46618521 -
Aev Aev08g1312 Chr08 8298085 8306488 -
Bach Bach9g01332 Chr9 11004885 11009822 -
Bva Bva07g01047 Chr07 12105437 12111185 +
Car Car07g02443 Chr07 45164482 45169040 +
Gso Gso15g1888 Chr15 41117306 41126516 +
Lan Lan8g1314 Chr8 19757514 19762988 -
Mtr Mtr8g1334 Chr8 16438701 16443569 -
Phac Phac11g02489 Chr11 35810215 35816553 -
Phco Phco9g02057 Chr9 45571822 45577118 -
Psa Psa4g3336 Chr4 284055599 284059617 +
Spst Spst11g00027 Chr11 505089 511857 -
Ssu Ssu2g0346 Chr2 22147908 22196239 -
Tpr Tpr7g1536 Chr7 17242866 17254108 +
Trre Trre15g01582 Chr15 12709941 12713865 -
Vimu Vimu5g01003 Chr5 15911543 15916386 -
Pvu Pvu11g1971 Chr11 46625566 46631485 +
Aed Aed4g1418 Chr4 18573478 18582536 +
Apr Apr5g0877 Chr5 12860929 12867207 +
Gma Gma13g01653 Chr13 31357415 31366158 +
Gma Gma15g02152 Chr15 43599034 43607939 +
Gso Gso11g2204 Chr11 37672099 37678724 +
Mal Mal5g1914 Chr5 40802608 40806903 -
Mepo Mepo1g03326 Chr1 38337888 38342934 +
Mesa Mesa29g03801 Chr29 61528358 61532442 +
Mtr Mtr8g1332 Chr8 16420158 16424091 -
Phac Phac11g02490 Chr11 35810215 35816553 -
Phco Phco9g02058 Chr9 45581840 45586925 +
Psa Psa4g3337 Chr4 284100662 284103994 +
Spst Spst11g00026 Chr11 495916 503110 +
Tpr Tpr7g1537 Chr7 17274218 17279895 +
Trre Trre15g01581 Chr15 12694330 12697930 -
Tsu Tsu08g01517 Chr08 17791659 17796574 -
Vimu Vimu5g01004 Chr5 15961170 15967060 +
Vivi Vivi7g04888 Chr7 127526098 127529900 +
Pvu Pvu11g1972 Chr11 46638453 46646994 +
Aed Aed4g1419 Chr4 18594069 18605300 +
Car Car07g02445 Chr07 45302411 45308369 +
Gso Gso11g2205 Chr11 37687138 37695959 +
Mepo Mepo1g03327 Chr1 38358649 38363958 +
Mesa Mesa29g03802 Chr29 61558945 61566077 +
Mtr Mtr8g1331 Chr8 16402349 16408841 -
Phco Phco9g02059 Chr9 45589602 45597588 +
Spst Spst11g00025 Chr11 486030 492259 -
Tpr Tpr7g1538 Chr7 17287144 17291639 +
Tsu Tsu08g01515 Chr08 17777246 17781429 -
Vimu Vimu5g01007 Chr5 16128222 16134709 +
Pvu Pvu11g1973 Chr11 46652669 46659245 +
Aed Aed4g1421 Chr4 18623037 18631876 +
Ahy Ahy20g3098 Chr20 141644629 141652987 +
Aip Aip10g03506 Chr10 133505776 133514279 +
Car Car07g02446 Chr07 45383783 45394157 +
Cca Cca04g01743 Chr04 30509967 30516758 -
Gma Gma13g01654 Chr13 31383704 31389606 +
Gso Gso11g2206 Chr11 37701110 37708293 +
Lasa Lasa4g01268 Chr4 111091535 111094890 -
Mal Mal5g1913 Chr5 40788298 40793524 -
Mepo Mepo1g03329 Chr1 38399029 38402053 +
Mesa Mesa29g03803 Chr29 61573203 61577654 +
Mtr Mtr8g1330 Chr8 16387230 16392312 -
Phco Phco9g02060 Chr9 45615577 45622422 +
Pste Pste1g00959 Chr1 3013720 3020674 +
Rops Rops3g02484 Chr3 51281641 51288436 +
Seca Seca4g07610 Chr4 173528828 173534914 -
Spst Spst11g00024 Chr11 411528 416811 -
Tpr Tpr7g1539 Chr7 17298870 17312567 +
Trre Trre15g01580 Chr15 12675601 12682443 -
Tsu Tsu08g01514 Chr08 17694740 17738636 -
Vian Vian5g00547 Chr5 19272163 19286649 +
Vimu Vimu5g01011 Chr5 16176029 16182916 +
Viun Viun11g00369 Chr11 3206147 3211540 +
Vivi Vivi7g04886 Chr7 127277805 127281653 -
Pvu Pvu11g1974 Chr11 46667767 46673526 +
Adu Adu10g02802 Chr10 104612104 104628537 +
Aed Aed4g1422 Chr4 18646827 18654199 +
Ahy Ahy20g3099 Chr20 141656591 141670056 +
Ahy Ahy10g2537 Chr10 114881369 114898545 +
Aip Aip10g03507 Chr10 133518389 133540309 +
Car Car07g02447 Chr07 45420019 45450276 +
Gso Gso11g2207 Chr11 37712948 37719203 +
Lal Lal1g0665 Chr1 4354033 4360396 -
Lal Lal2g0736 Chr2 4641017 4655113 +
Lan Lan13g0665 Chr13 5683999 5690062 -
Mepo Mepo1g03330 Chr1 38409512 38413302 +
Mesa Mesa29g03804 Chr29 61581945 61587303 +
Mtr Mtr8g1329 Chr8 16378424 16383748 -
Phco Phco9g02061 Chr9 45631013 45636924 +
Pste Pste1g00916 Chr1 2849304 2855898 -
Tpr Tpr7g1541 Chr7 17334490 17339481 +
Pvu Pvu11g1975 Chr11 46677436 46677621 -
Pvu Pvu11g1976 Chr11 46681529 46685810 -
Pvu Pvu11g1977 Chr11 46694239 46696240 -
Accr Accr1g02282 Chr1 57660742 57662733 -
Adu Adu10g02803 Chr10 104629784 104633673 -
Aed Aed4g1423 Chr4 18666465 18671310 -
Ahy Ahy20g3100 Chr20 141671172 141675133 -
Ahy Ahy10g2538 Chr10 114899764 114903675 -
Aip Aip10g03508 Chr10 133545364 133549270 -
Alju Alju10g1732 Chr10 27737382 27739328 +
Apr Apr5g0878 Chr5 12872291 12875164 -
Bach Bach9g01330 Chr9 10995284 10997227 +
Bisa Bisa02g2459 Chr02 61594849 61596873 -
Bva Bva07g01050 Chr07 12117204 12120790 -
Car Car07g02448 Chr07 45450839 45454455 -
Cca Cca04g01741 Chr04 30408559 30410907 +
Dere Dere07g1470 Chr07 19461410 19463383 +
Enph Enph8g1509 Chr8 26686673 26691564 +
Glsi Glsi04g1739 Chr04 63692408 63694423 -
Gma Gma13g01655 Chr13 31390494 31396301 -
Gma Gma15g02153 Chr15 43616747 43630838 -
Gso Gso15g1889 Chr15 41137452 41149177 -
Gso Gso11g2208 Chr11 37719984 37726336 -
Lasa Lasa4g01267 Chr4 111087350 111089422 +
Lele Lele32g1095 Chr32 9968613 9970586 -
Mal Mal5g1911 Chr5 40781131 40783248 +
Mepo Mepo1g03331 Chr1 38414836 38421149 -
Mibi Mibi07g1659 Chr07 32140976 32142836 +
Mtr Mtr8g1328 Chr8 16371805 16378211 +
Phco Phco9g02063 Chr9 45654175 45656187 -
Pste Pste1g00912 Chr1 2840913 2843535 +
Pumo Pumo10g02758 Chr10 52094626 52101191 -
Spst Spst11g00023 Chr11 394092 396098 +
Ssu Ssu2g0344 Chr2 22113416 22115053 +
Sto Sto4g2424 Chr4 25632757 25634700 +
Tpr Tpr7g1542 Chr7 17339556 17343285 -
Trre Trre15g01579 Chr15 12670369 12675139 +
Tsu Tsu08g01513 Chr08 17662125 17693987 +
Vivi Vivi7g04885 Chr7 127272693 127277188 +