Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1788 . . . . . . . . . . . . . . . . Car07g02307 Cca04g01577 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01898 . . Pste1g04127 . Rops3g02118 . Spst11g00486 . . . . . . . . . . .
Pvu11g1789 . . . Aed5g1133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1790 . . . . . . . . . . . Apr5g0850 . Bach9g01030 . Bva07g01417 . . . . . . . . . . . . . . . . . . . . . . Lja3g2641 . . . . . Phac11g02290 . . Psa4g3196 . . . . . . . Tpr7g1432 . . . . . . . .
Pvu11g1791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1792 . . . . . . . . . . . Apr5g0845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01899 . . . . . . Spst11g00485 . . . . . . . . . Vivi7g00388 .
Pvu11g1793 . . . . Aev10g1091 . . . . . . Apr5g0844 . Bach9g01004 . Bva07g01447 . Cca04g01579 . . . . . . . . Lal1g0626 Lal2g0671 . Lan7g0668 . Lan13g0623 . . . . . . Lja3g4926 . . . . . . Phco9g01900 . . Pste1g00249 . . . Spst11g00483 . . . . . . . . . . .
Pvu11g1794 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01901 . . Pste1g04130 . . . . . . . . . . . . . . .
Pvu11g1795 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1796 . . . Aed4g1223 . . . . . . . Apr5g0843 . . . . . Cca04g01580 . . . . Gma08g02168 . . Gso8g1959 . . . . . . . . . . . . . Mal5g2253 Mepo1g03067 Mesa29g03438 . Mtr8g1567 . Phco9g01902 . . Pste1g04132 . . Seca4g08083 Spst11g00482 . . Tpr7g1349 Trre15g01768 Tsu08g01733 . Vifa4g00279 . . . .
Pvu11g1797 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Aev Aev10g1091 Chr10 14599462 14600995 +
Pvu Pvu11g1788 Chr11 44415952 44418784 -
Car Car07g02307 Chr07 36780547 36781840 +
Cca Cca04g01577 Chr04 23347616 23359980 -
Phco Phco9g01898 Chr9 43650203 43652602 -
Pste Pste1g04127 Chr1 24626279 24628047 -
Rops Rops3g02118 Chr3 40163679 40166517 +
Spst Spst11g00486 Chr11 26643110 26644787 +
Pvu Pvu11g1789 Chr11 44422350 44431488 -
Aed Aed5g1133 Chr5 9635224 9643222 +
Pvu Pvu11g1790 Chr11 44428508 44430489 +
Apr Apr5g0850 Chr5 12395618 12427078 +
Bach Bach9g01030 Chr9 7693567 7714122 -
Bva Bva07g01417 Chr07 14430733 14445756 +
Lja Lja3g2641 Chr3 36345730 36371925 -
Phac Phac11g02290 Chr11 33851909 33853611 +
Psa Psa4g3196 Chr4 266479409 266506329 +
Tpr Tpr7g1432 Chr7 15648561 15668838 -
Pvu Pvu11g1791 Chr11 44437108 44439790 -
Pvu Pvu11g1792 Chr11 44465565 44466394 +
Apr Apr5g0845 Chr5 12287565 12287945 -
Phco Phco9g01899 Chr9 43677480 43677851 +
Spst Spst11g00485 Chr11 26612468 26612839 -
Vivi Vivi7g00388 Chr7 22814918 22815388 +
Pvu Pvu11g1793 Chr11 44510474 44512873 +
Aev Aev10g1091 Chr10 14599462 14600995 +
Apr Apr5g0844 Chr5 12229281 12230854 -
Bach Bach9g01004 Chr9 7513885 7515762 -
Bva Bva07g01447 Chr07 14560232 14562067 +
Cca Cca04g01579 Chr04 23573303 23576292 +
Lal Lal1g0626 Chr1 4012726 4014123 +
Lal Lal2g0671 Chr2 4051945 4053904 +
Lan Lan7g0668 Chr7 5532055 5533903 +
Lan Lan13g0623 Chr13 5160671 5162468 +
Lja Lja3g4926 Chr3 91300159 91301959 +
Phco Phco9g01900 Chr9 43730707 43732585 +
Pste Pste1g00249 Chr1 877307 884625 +
Spst Spst11g00483 Chr11 26576386 26577554 -
Pvu Pvu11g1794 Chr11 44518424 44518939 -
Phco Phco9g01901 Chr9 43739136 43739648 -
Pste Pste1g04130 Chr1 24784043 24788634 -
Pvu Pvu11g1795 Chr11 44523573 44524023 -
Pvu Pvu11g1796 Chr11 44526802 44532963 +
Aed Aed4g1223 Chr4 12291328 12294627 -
Apr Apr5g0843 Chr5 12210463 12218499 -
Cca Cca04g01580 Chr04 23611208 23614847 +
Gma Gma08g02168 Chr08 20338515 20342621 -
Gso Gso8g1959 Chr8 19964443 19968438 -
Mal Mal5g2253 Chr5 57083806 57086016 -
Mepo Mepo1g03067 Chr1 34370173 34373850 +
Mesa Mesa29g03438 Chr29 53749768 53751880 +
Mtr Mtr8g1567 Chr8 21714106 21717422 -
Phco Phco9g01902 Chr9 43743918 43749393 +
Pste Pste1g04132 Chr1 24814133 24817624 +
Seca Seca4g08083 Chr4 190210022 190214157 -
Spst Spst11g00482 Chr11 26531995 26533450 -
Tpr Tpr7g1349 Chr7 14328684 14331962 +
Trre Trre15g01768 Chr15 14204463 14207630 -
Tsu Tsu08g01733 Chr08 21028583 21031253 -
Vifa Vifa4g00279 Chr4 59825892 59826834 +
Pvu Pvu11g1797 Chr11 44602387 44602979 +
Lja Lja3g2641 Chr3 36345730 36371925 -
Tpr Tpr7g1432 Chr7 15648561 15668838 -