Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1780 . . . . . . . . . . . Apr5g0726 . . Bisa02g2180 . . . . . . Glsi04g2216 Gma08g02166 . . Gso8g1957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto4g0778 . . . . . . . . Vra2g1333
Pvu11g1781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01897 . . . . . . . . . . . . . . . . . .
Pvu11g1782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1783 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1786 . . . Aed4g1222 . . . . . . . . . . . . . Cca04g01574 . . . . Gma08g02167 . . Gso8g1958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0532 . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1778 Chr11 44264184 44264504 -
Pvu Pvu11g1779 Chr11 44272655 44273059 +
Pvu Pvu11g1780 Chr11 44314463 44323283 -
Apr Apr5g0726 Chr5 9927777 9957689 -
Bisa Bisa02g2180 Chr02 50932714 50937386 +
Glsi Glsi04g2216 Chr04 74685930 74695684 +
Gma Gma08g02166 Chr08 20241076 20259137 -
Gso Gso8g1957 Chr8 19870284 19887997 -
Sto Sto4g0778 Chr4 5600031 5610448 -
Vra Vra2g1333 Chr2 21252677 21266911 +
Pvu Pvu11g1781 Chr11 44329347 44329530 -
Phco Phco9g01897 Chr9 43605078 43645367 -
Pvu Pvu11g1782 Chr11 44333548 44333771 -
Pvu Pvu11g1783 Chr11 44335313 44335891 -
Pvu Pvu11g1784 Chr11 44336276 44336773 -
Pvu Pvu11g1785 Chr11 44341431 44341886 +
Pvu Pvu11g1786 Chr11 44374679 44378415 -
Aed Aed4g1222 Chr4 12249020 12266180 +
Cca Cca04g01574 Chr04 23221894 23236177 -
Gma Gma08g02167 Chr08 20288426 20310272 -
Gso Gso8g1958 Chr8 19918656 19936849 -
Pvu Pvu11g1787 Chr11 44402919 44413216 +
Ssu Ssu2g0532 Chr2 31314238 31334601 -