Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1628 . . . Aed5g1236 . . . . . . . Apr5g0148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01761 . . . . . . . . . . . . . . Vimu5g00552 . . Vra2g1248
Pvu11g1629 . . . Aed5g1229 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01762 . . . . . . . . . . . . . . Vimu5g00553 . . Vra2g1246
Pvu11g1630 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1631 . . . Aed5g1225 . . . . . . . Apr5g0147 Arst7g03079 . . . . . . . . . . . . . Lal1g0587 . . . . Lan13g0588 . . . . . . . . . . . . . Phco9g01764 . . . . . . . . . . . . . . Vimu5g00555 . . Vra2g1245
Pvu11g1632 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1634 . . Adu03g01808 . . . Ahy13g1929 Aip03g02146 . . Amo03g0018 . Arst3g02389 . . . . . . Dod03g1869 . . . . . . . . Lal9g0531 . . . . . . . . . . . . . . . . Phco9g01765 . . . . . . . . . . . . . . Vimu5g00556 . . Vra2g1244
Pvu11g1635 Acco08g1047 Accr13g01013 . Aed5g1155 Aev10g1376 . . . Alju10g1039 . . . . Bach9g00738 Bisa02g2964 Bva07g01752 . . Dere07g1173 . Enph8g0378 Glsi04g1148 . . . . . . . . . . . . Lele29g0768 Lele30g0636 Lele31g0773 Lele32g0743 . . . . Mibi07g1017 . . Phco9g01766 Prci6g1206 . . . . . Spst11g00617 . Sto4g2863 Tpr7g2043 . . . . Vimu5g00557 . Vivi7g00474 Vra2g1243
Pvu11g1636 . . . . . . . . . . . Apr5g0104 Arst3g02345 . . . Car07g02178 Cca04g01416 . . . . Gma12g01406 Gma06g02245 Gso12g1250 Gso6g2054 . Lal2g0577 . Lan7g0591 . . Lapu5g01005 . . . . . Lja3g4816 . . . . . . Phco9g01768 . . Pste1g03969 Pumo11g00683 Rops3g01889 Seca4g09510 Spst11g00615 Ssu3g1819 . Tpr7g2097 . Tsu08g02082 . Vifa4g00380 Vimu5g00560 . Vivi7g00263 Vra2g1242
Pvu11g1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2363 . . . . . Phco9g01769 . . . . . . Spst11g00614 . . . . . . . Vimu5g00562 . . Vra2g1241
   
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Select Species Gene Chromosome Start End Strand
Aev Aev10g1376 Chr10 17173003 17181625 +
Pvu Pvu11g1628 Chr11 41339633 41342907 -
Aed Aed5g1236 Chr5 11231582 11234836 +
Apr Apr5g0148 Chr5 1292704 1295839 +
Phco Phco9g01761 Chr9 41465079 41468273 -
Vimu Vimu5g00552 Chr5 5821265 5826802 -
Vra Vra2g1248 Chr2 17907318 17912693 +
Pvu Pvu11g1629 Chr11 41395112 41397006 -
Aed Aed5g1229 Chr5 11098220 11099842 +
Phco Phco9g01762 Chr9 41488861 41490513 -
Vimu Vimu5g00553 Chr5 5867977 5869687 -
Vra Vra2g1246 Chr2 17884259 17886379 +
Pvu Pvu11g1630 Chr11 41418909 41419151 -
Pvu Pvu11g1631 Chr11 41443955 41447640 +
Aed Aed5g1225 Chr5 11039216 11044274 +
Apr Apr5g0147 Chr5 1277631 1281817 +
Arst Arst7g03079 Chr7 77185071 77188623 -
Lal Lal1g0587 Chr1 3761172 3764211 +
Lan Lan13g0588 Chr13 4709224 4712977 +
Phco Phco9g01764 Chr9 41521254 41524266 +
Vimu Vimu5g00555 Chr5 5908958 5912611 +
Vra Vra2g1245 Chr2 17838909 17842655 -
Pvu Pvu11g1632 Chr11 41495069 41495093 +
Pvu Pvu11g1633 Chr11 41495260 41495451 +
Pvu Pvu11g1634 Chr11 41506228 41510993 +
Adu Adu03g01808 Chr03 31049085 31053077 +
Ahy Ahy13g1929 Chr13 33177512 33195253 +
Aip Aip03g02146 Chr03 31975022 31978882 +
Amo Amo03g0018 Chr03 465842 485456 +
Arst Arst3g02389 Chr3 31376392 31390030 +
Dod Dod03g1869 Chr03 37868848 37880918 +
Lal Lal9g0531 Chr9 3566687 3570657 +
Phco Phco9g01765 Chr9 41555229 41559691 +
Vimu Vimu5g00556 Chr5 5961785 5968986 +
Vra Vra2g1244 Chr2 17775774 17783198 -
Pvu Pvu11g1635 Chr11 41542019 41546164 +
Acco Acco08g1047 Chr08 10315278 10321127 -
Accr Accr13g01013 Chr13 12161515 12167034 -
Aed Aed5g1155 Chr5 9931549 9934016 -
Aev Aev10g1376 Chr10 17173003 17181625 +
Alju Alju10g1039 Chr10 10184794 10190739 -
Bach Bach9g00738 Chr9 5199593 5204715 -
Bisa Bisa02g2964 Chr02 75128109 75137203 +
Bva Bva07g01752 Chr07 16202493 16206824 +
Dere Dere07g1173 Chr07 15127034 15146103 -
Enph Enph8g0378 Chr8 12475499 12483925 +
Glsi Glsi04g1148 Chr04 10583634 10590244 -
Lele Lele29g0768 Chr29 4965471 4970632 -
Lele Lele30g0636 Chr30 11041610 11055690 +
Lele Lele31g0773 Chr31 15434333 15440871 +
Lele Lele32g0743 Chr32 4791175 4799350 -
Mibi Mibi07g1017 Chr07 13974802 13980940 -
Phco Phco9g01766 Chr9 41572699 41577138 +
Prci Prci6g1206 Chr6 8757313 8760074 -
Spst Spst11g00617 Chr11 28320325 28324501 -
Sto Sto4g2863 Chr4 29326680 29330299 +
Tpr Tpr7g2043 Chr7 25453535 25459204 +
Vimu Vimu5g00557 Chr5 5983366 5987334 +
Vivi Vivi7g00474 Chr7 27354448 27358136 -
Vra Vra2g1243 Chr2 17727588 17735245 -
Pvu Pvu11g1636 Chr11 41576456 41578571 -
Apr Apr5g0104 Chr5 931722 935025 -
Arst Arst3g02345 Chr3 30487638 30501235 -
Car Car07g02178 Chr07 30205582 30208310 -
Cca Cca04g01416 Chr04 18710738 18713438 -
Gma Gma12g01406 Chr12 22414049 22417186 -
Gma Gma06g02245 Chr06 41896073 41899302 +
Gso Gso12g1250 Chr12 22897447 22899915 -
Gso Gso6g2054 Chr6 37937286 37940560 +
Lal Lal2g0577 Chr2 3472807 3475480 -
Lan Lan7g0591 Chr7 4577995 4580558 -
Lapu Lapu5g01005 Chr5 20193917 20198891 -
Lja Lja3g4816 Chr3 90222948 90225236 -
Phco Phco9g01768 Chr9 41607906 41609630 -
Pste Pste1g03969 Chr1 20961679 20965391 -
Pumo Pumo11g00683 Chr11 24120632 24122726 +
Rops Rops3g01889 Chr3 32923159 32925481 -
Seca Seca4g09510 Chr4 224839760 224842085 -
Spst Spst11g00615 Chr11 28280335 28281889 -
Ssu Ssu3g1819 Chr3 56993283 56996093 +
Tpr Tpr7g2097 Chr7 26609849 26615860 +
Tsu Tsu08g02082 Chr08 27589894 27596688 -
Vifa Vifa4g00380 Chr4 101181290 101181907 +
Vimu Vimu5g00560 Chr5 6019973 6022486 -
Vivi Vivi7g00263 Chr7 15179050 15179880 -
Vra Vra2g1242 Chr2 17692632 17695426 +
Pvu Pvu11g1637 Chr11 41584638 41586659 -
Mal Mal5g2363 Chr5 62674553 62675305 +
Phco Phco9g01769 Chr9 41618906 41619655 -
Spst Spst11g00614 Chr11 28277583 28278341 +
Vimu Vimu5g00562 Chr5 6027260 6035701 -
Vra Vra2g1241 Chr2 17676169 17678517 +
Aed Aed5g1225 Chr5 11039216 11044274 +
Vivi Vivi7g00474 Chr7 27354448 27358136 -