Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2415 . . . . . . Phco9g01750 . . Pste1g03914 . . . . . . . . Tsu08g02001 . . Vimu5g00525 . . Vra2g1259
Pvu11g1620 . . . . Aev10g1083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g01989 . . . . . Vra2g1258
Pvu11g1621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01752 . . . . . . . . . . . . . . Vimu5g00541 . . Vra2g1254
Pvu11g1622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01753 . . . . . . . . . . . . . . . . . .
Pvu11g1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1624 Acco08g1032 Accr13g01001 . Aed5g1137 . . . . Alju10g1030 . . Apr5g0102 . . Bisa02g2974 . Car07g02175 Cca04g01407 Dere07g1162 Dod03g1887 Enph8g0383 Glsi04g1127 Gma12g01397 Gma06g02255 . Gso6g2057 . Lal2g0575 . Lan7g0589 . . . . Lele29g0759 Lele30g0643 Lele31g0779 Lele32g0734 Lja3g4813 Mal5g2364 . . Mibi07g1010 . . Phco9g01755 Prci6g1198 . Pste1g03965 Pumo11g00691 Rops3g01869 Seca4g09502 Spst11g00626 Ssu3g1822 Sto4g2872 Tpr7g2099 . Tsu08g02078 Vian5g00299 Vifa4g00383 Vimu5g00544 . Vivi7g00259 Vra2g1252
Pvu11g1625 . . Adu03g01811 . Aev04g2454 . Ahy13g1932 Aip03g02149 . . Amo03g0026 . Arst3g02394 . . . . . . . . . . . . . . . . . . . . Lasa4g01397 . . . . . . . . . . . Phco9g01756 . . . . . . . . . . . . . . Vimu5g00545 . . Vra2g1251
Pvu11g1626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01757 . . . . . . . . . . . . . . Vimu5g00547 . . Vra2g1250
Pvu11g1627 . . Adu03g01695 Aed5g1237 . . Ahy13g1829 Aip03g02030 . Amo13g2302 Amo03g0175 Apr5g0149 Arst3g02257 . . . . . . . . . . . . . . . . . Lan8g1361 . . . . . . . . . . . . . . Phco9g01760 . . . . . . . . . . . . . . Vimu5g00551 . . Vra2g1249
   
Previous Page 2737 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1618 Chr11 41167189 41167496 +
Pvu Pvu11g1619 Chr11 41172938 41187938 -
Lja Lja3g2415 Chr3 29585155 29597998 +
Phco Phco9g01750 Chr9 41342304 41356455 -
Pste Pste1g03914 Chr1 20104356 20115474 +
Tsu Tsu08g02001 Chr08 26172370 26197073 +
Vimu Vimu5g00525 Chr5 5511862 5538340 -
Vra Vra2g1259 Chr2 18173620 18193580 +
Pvu Pvu11g1620 Chr11 41221588 41224573 +
Aev Aev10g1083 Chr10 14512553 14517952 +
Tsu Tsu08g01989 Chr08 25925193 26003105 -
Vra Vra2g1258 Chr2 18160733 18164226 +
Pvu Pvu11g1621 Chr11 41230119 41232204 -
Phco Phco9g01752 Chr9 41386574 41387841 -
Vimu Vimu5g00541 Chr5 5709886 5710913 -
Vra Vra2g1254 Chr2 18045467 18046858 +
Pvu Pvu11g1622 Chr11 41240000 41249248 -
Phco Phco9g01753 Chr9 41393654 41395847 -
Pvu Pvu11g1623 Chr11 41242012 41243765 +
Pvu Pvu11g1624 Chr11 41268970 41271073 +
Acco Acco08g1032 Chr08 10219195 10220118 +
Accr Accr13g01001 Chr13 12074071 12074994 +
Aed Aed5g1137 Chr5 9667217 9669590 +
Alju Alju10g1030 Chr10 10124330 10125678 +
Apr Apr5g0102 Chr5 916559 919230 +
Bisa Bisa02g2974 Chr02 75300044 75300856 -
Car Car07g02175 Chr07 30026888 30030289 +
Cca Cca04g01407 Chr04 18549566 18552130 +
Dere Dere07g1162 Chr07 14990911 14992705 +
Dod Dod03g1887 Chr03 39558039 39562006 +
Enph Enph8g0383 Chr8 12518424 12520819 +
Glsi Glsi04g1127 Chr04 10249469 10257782 +
Gma Gma12g01397 Chr12 22238414 22239001 +
Gma Gma06g02255 Chr06 42090122 42097156 -
Gso Gso6g2057 Chr6 38130483 38136086 -
Lal Lal2g0575 Chr2 3465472 3468815 +
Lan Lan7g0589 Chr7 4571139 4573503 +
Lele Lele29g0759 Chr29 4924183 4927687 +
Lele Lele30g0643 Chr30 11087233 11088602 -
Lele Lele31g0779 Chr31 15480393 15482824 -
Lele Lele32g0734 Chr32 4758415 4759852 +
Lja Lja3g4813 Chr3 90182507 90185169 -
Mal Mal5g2364 Chr5 62677075 62677896 -
Mibi Mibi07g1010 Chr07 13894885 13895793 +
Phco Phco9g01755 Chr9 41411014 41415816 +
Prci Prci6g1198 Chr6 8687252 8689273 +
Pste Pste1g03965 Chr1 20818219 20820306 +
Pumo Pumo11g00691 Chr11 24212330 24216712 -
Rops Rops3g01869 Chr3 32579101 32583057 +
Seca Seca4g09502 Chr4 224622125 224624717 +
Spst Spst11g00626 Chr11 28414686 28420804 -
Ssu Ssu3g1822 Chr3 57133411 57134139 -
Sto Sto4g2872 Chr4 29374047 29376509 -
Tpr Tpr7g2099 Chr7 26622510 26624874 -
Tsu Tsu08g02078 Chr08 27517672 27521602 +
Vian Vian5g00299 Chr5 6477671 6478390 +
Vifa Vifa4g00383 Chr4 102087787 102089118 -
Vimu Vimu5g00544 Chr5 5751003 5751722 +
Vivi Vivi7g00259 Chr7 15105964 15107672 +
Vra Vra2g1252 Chr2 17985085 17990234 -
Pvu Pvu11g1625 Chr11 41277965 41281021 +
Adu Adu03g01811 Chr03 31156298 31160966 -
Aev Aev04g2454 Chr04 24124457 24132125 -
Ahy Ahy13g1932 Chr13 33318837 33323325 -
Aip Aip03g02149 Chr03 32078335 32082830 -
Amo Amo03g0026 Chr03 625504 630324 -
Arst Arst3g02394 Chr3 31493223 31497997 -
Lasa Lasa4g01397 Chr4 142395224 142398008 -
Phco Phco9g01756 Chr9 41425531 41429508 +
Vimu Vimu5g00545 Chr5 5768292 5771678 +
Vra Vra2g1251 Chr2 17966185 17969994 -
Pvu Pvu11g1626 Chr11 41290321 41290935 -
Phco Phco9g01757 Chr9 41433462 41434085 -
Vimu Vimu5g00547 Chr5 5784673 5785464 -
Vra Vra2g1250 Chr2 17953783 17954619 +
Pvu Pvu11g1627 Chr11 41334865 41337658 +
Adu Adu03g01695 Chr03 28188249 28190804 -
Aed Aed5g1237 Chr5 11238065 11239736 -
Ahy Ahy13g1829 Chr13 30175090 30177099 -
Aip Aip03g02030 Chr03 28992210 28994944 -
Amo Amo13g2302 Chr13 39589163 39591215 -
Amo Amo03g0175 Chr03 3356303 3359726 +
Apr Apr5g0149 Chr5 1296261 1299293 -
Arst Arst3g02257 Chr3 28525532 28527409 -
Lan Lan8g1361 Chr8 20443411 20445557 +
Phco Phco9g01760 Chr9 41460377 41462085 +
Vimu Vimu5g00551 Chr5 5817690 5818841 +
Vra Vra2g1249 Chr2 17914349 17917064 -