Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01733 . . . . . . . . . . . . . . . . . .
Pvu11g1599 . . Adu03g01677 Aed5g1112 . . Ahy13g1809 Aip03g02003 . . . Apr5g0082 Arst3g02238 . . . . Cca04g01384 . . . . . Gma06g02288 . . . Lal2g0562 . Lan7g0579 . . . . . . . . Lja3g2448 . . . . . . Phco9g01735 . . Pste1g03936 Pumo11g00721 . Seca4g09462 Spst11g00651 . . . . Tsu08g02052 . . . Viun11g00897 . .
Pvu11g1600 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0563 . Lan7g0580 . . . . . . . . Lja3g2447 . . Mesa29g03300 . Mtr8g1694 . . . . Pste1g03934 . . . . . . . . Tsu08g02050 . . Vimu5g00377 . Vivi7g00225 Vra2g1313
Pvu11g1601 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal2g0567 . Lan7g0582 . . . Lasa4g01395 . . . . . . . . . . . Phco9g01736 . . . . . . . . . . . . . . Vimu5g00378 . Vivi7g00224 .
Pvu11g1602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1603 . . . . . . . . . . Amo03g0200 . . . . . . . . . . . Gma12g01360 . . . . . . . . . . . . . . . Lja3g2443 . . . . . . Phco9g01737 . . Pste1g03929 . . . . . . . . . . . Vimu5g00384 . . Vra2g1312
Pvu11g1604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2442 . . . . . . Phco9g01738 . . Pste1g03928 . . . . . . . . . . . Vimu5g00385 . . Vra2g1311
Pvu11g1605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2441 . . . . . . Phco9g01739 . . Pste1g03927 . . . . . . . . . . . Vimu5g00386 . . Vra2g1310
Pvu11g1606 . . . . . . . . . . Amo03g0199 Apr5g0815 . . Bisa02g3013 . . . Dere07g0076 . Enph8g0420 Glsi04g1062 . . . . . . . . . . . . . . Lele31g0818 . Lja3g2440 . . . Mibi07g0964 . . . Prci6g1144 . Pste1g03926 . . . . . Sto4g2909 . . . . . . . . Vra2g1309
Pvu11g1607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g2439 . . Mesa29g03303 . Mtr8g1692 . . . . Pste1g03925 . . . . . . . Trre15g02323 Tsu08g02043 . . Vimu5g00387 . Vivi7g00188 Vra2g1308
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1598 Chr11 40748022 40750811 +
Phco Phco9g01733 Chr9 40865570 40868356 +
Pvu Pvu11g1599 Chr11 40785165 40785834 -
Adu Adu03g01677 Chr03 27842759 27843970 -
Aed Aed5g1112 Chr5 9417943 9420010 -
Ahy Ahy13g1809 Chr13 29477722 29478999 -
Aip Aip03g02003 Chr03 28375445 28376613 -
Apr Apr5g0082 Chr5 765207 765972 -
Arst Arst3g02238 Chr3 28181412 28182615 -
Cca Cca04g01384 Chr04 18053119 18054616 -
Gma Gma06g02288 Chr06 42725883 42727270 +
Lal Lal2g0562 Chr2 3394916 3395721 -
Lan Lan7g0579 Chr7 4456680 4457927 -
Lja Lja3g2448 Chr3 30295835 30297042 -
Phco Phco9g01735 Chr9 41048545 41049100 -
Pste Pste1g03936 Chr1 20337995 20344106 +
Pumo Pumo11g00721 Chr11 24937260 24938642 +
Seca Seca4g09462 Chr4 224110181 224113932 +
Spst Spst11g00651 Chr11 28705502 28706099 +
Tsu Tsu08g02052 Chr08 27238280 27239489 -
Viun Viun11g00897 Chr11 14330929 14332516 -
Pvu Pvu11g1600 Chr11 40803495 40805458 +
Lal Lal2g0563 Chr2 3397768 3401003 -
Lan Lan7g0580 Chr7 4469285 4472374 -
Lja Lja3g2447 Chr3 30290286 30294080 -
Mesa Mesa29g03300 Chr29 49753634 49756450 +
Mtr Mtr8g1694 Chr8 25020763 25024439 -
Pste Pste1g03934 Chr1 20315004 20321155 -
Tsu Tsu08g02050 Chr08 27163354 27166008 -
Vimu Vimu5g00377 Chr5 3495833 3497386 +
Vivi Vivi7g00225 Chr7 12805678 12809123 -
Vra Vra2g1313 Chr2 20820629 20837490 -
Pvu Pvu11g1601 Chr11 40813119 40814437 +
Lal Lal2g0567 Chr2 3418903 3421212 +
Lan Lan7g0582 Chr7 4487771 4490414 +
Lasa Lasa4g01395 Chr4 141153324 141156618 +
Phco Phco9g01736 Chr9 41065120 41071909 +
Vimu Vimu5g00378 Chr5 3498377 3508355 +
Vivi Vivi7g00224 Chr7 12805678 12809123 -
Pvu Pvu11g1602 Chr11 40815268 40815570 -
Pvu Pvu11g1603 Chr11 40848952 40853264 +
Amo Amo03g0200 Chr03 3851573 3856801 -
Gma Gma12g01360 Chr12 21052436 21060965 -
Lja Lja3g2443 Chr3 30155947 30160457 -
Phco Phco9g01737 Chr9 41099207 41103255 +
Pste Pste1g03929 Chr1 20273037 20277674 -
Vimu Vimu5g00384 Chr5 3538636 3542638 +
Vra Vra2g1312 Chr2 20804656 20809039 -
Pvu Pvu11g1604 Chr11 40867059 40872605 +
Lja Lja3g2442 Chr3 30148406 30151641 -
Phco Phco9g01738 Chr9 41112142 41115094 +
Pste Pste1g03928 Chr1 20264736 20270888 -
Vimu Vimu5g00385 Chr5 3549091 3552808 +
Vra Vra2g1311 Chr2 20794828 20799317 -
Pvu Pvu11g1605 Chr11 40884269 40887998 -
Lja Lja3g2441 Chr3 30143753 30146654 +
Phco Phco9g01739 Chr9 41126722 41128788 -
Pste Pste1g03927 Chr1 20260956 20263594 +
Vimu Vimu5g00386 Chr5 3563238 3566311 -
Vra Vra2g1310 Chr2 20781778 20784068 +
Pvu Pvu11g1606 Chr11 40889169 40891654 -
Amo Amo03g0199 Chr03 3848477 3850830 +
Apr Apr5g0815 Chr5 11759015 11760041 +
Bisa Bisa02g3013 Chr02 76071538 76073273 -
Dere Dere07g0076 Chr07 2117215 2123561 -
Enph Enph8g0420 Chr8 12928656 12932627 -
Glsi Glsi04g1062 Chr04 9318860 9321887 +
Lele Lele31g0818 Chr31 15807796 15815628 -
Lja Lja3g2440 Chr3 30140286 30142007 +
Mibi Mibi07g0964 Chr07 12843482 12844395 +
Prci Prci6g1144 Chr6 8048714 8072468 +
Pste Pste1g03926 Chr1 20256443 20257281 +
Sto Sto4g2909 Chr4 29648218 29648926 -
Vra Vra2g1309 Chr2 20773337 20775844 +
Pvu Pvu11g1607 Chr11 40925274 40928159 +
Lja Lja3g2439 Chr3 30117556 30125054 -
Mesa Mesa29g03303 Chr29 49768598 49776304 -
Mtr Mtr8g1692 Chr8 25000935 25008528 +
Pste Pste1g03925 Chr1 20216300 20221810 -
Trre Trre15g02323 Chr15 19230073 19238431 -
Tsu Tsu08g02043 Chr08 26923581 26932385 -
Vimu Vimu5g00387 Chr5 3586552 3588211 +
Vivi Vivi7g00188 Chr7 10941173 10946964 +
Vra Vra2g1308 Chr2 20751382 20762889 -