Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01719 . . . . . . . Ssu3g1914 . . . . . . . . . .
Pvu11g1589 . . Adu03g01815 . . . Ahy13g1935 Aip03g02152 . . Amo03g0030 . Arst7g03113 . . . . . . . . . . . . . Lal1g0585 . . . Lan8g1367 Lan13g0587 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1590 Acco08g0909 Accr13g00896 . . . . . . Alju10g0931 . . . . . . . Car07g02141 . Dere07g0126 . . Glsi04g0971 . . . . . . . . . . . Lasa4g01563 Lele29g0689 . . Lele32g0668 . . . . Mibi07g0900 . . Phco9g01720 . . . . . . . . Sto4g2933 Tpr7g1990 . . . . Vimu5g00373 . . .
Pvu11g1591 . Accr1g03030 . . . . . . . . . . . . Bisa02g3072 . Car07g02143 . . . Enph8g0458 . . . . . . . . . . . . Lasa4g01562 . Lele30g0711 Lele31g0849 . . . . . . . . Phco9g01723 . . . . . . . . Sto4g2931 Tpr7g1989 . . . . Vimu5g00374 . . Vra2g1314
Pvu11g1592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu3g1901 . . . . . . . . . .
Pvu11g1593 . . . Aed5g1111 . . . . . . . . . . . Bva07g01794 Car07g02158 Cca04g01381 . Dod03g1891 . . . . . Gso6g2083 . . Lal9g0499 . . . . . . . . . Lja3g2449 Mal5g2387 . . . . . Phco9g01726 . . Pste1g03940 Pumo11g00726 Rops3g01823 Seca4g09461 Spst11g00655 Ssu3g1855 . . . Tsu08g02053 . . . Viun11g00889 . .
Pvu11g1594 . . . . Aev10g1415 . . . . . . . . . . Bva07g01793 . . . . . . . . . Gso6g2082 . . Lal9g0500 . . . . . . . . . . . . . . . . Phco9g01727 . . . . . . Spst11g00654 Ssu3g1852 . Tpr7g2110 . . . . . . Vivi7g00234 .
Pvu11g1595 . . . . . . . . . . . . . . . . Car07g02159 Cca04g01382 . . . . . Gma06g02294 . . . . . . . . . . . . . . . . . . . . . . . . . Pumo11g00724 . . Spst11g00653 . . . . . . . . Viun11g00893 . .
Pvu11g1596 . . . . . . . . . . . . . . . . . . . . . . . Gma06g02290 . . . . . . . . . . . . . . . Mal5g2378 . . . . . Phco9g01731 . . . . . . Spst11g00652 Ssu3g1850 . . . . . . . . . .
Pvu11g1597 . . Adu03g01676 . . . Ahy13g1808 Aip03g02001 . . . Apr5g0081 Arst3g02237 . . . . Cca04g01383 . . . . . Gma06g02289 . . . Lal2g0561 . Lan7g0578 . . . . . . . . . . . . . . . Phco9g01732 . . . Pumo11g00722 . . . . . . . . . . . Viun11g00894 . .
   
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Select Species Gene Chromosome Start End Strand
Arst Arst7g03113 Chr7 77372189 77375873 -
Accr Accr1g03030 Chr1 67056646 67058650 +
Pvu Pvu11g1588 Chr11 40250870 40252404 -
Phco Phco9g01719 Chr9 40600364 40601259 -
Ssu Ssu3g1914 Chr3 60260376 60262511 +
Pvu Pvu11g1589 Chr11 40295560 40296870 +
Adu Adu03g01815 Chr03 31238049 31238951 +
Ahy Ahy13g1935 Chr13 33366699 33367674 +
Aip Aip03g02152 Chr03 32124440 32125290 +
Amo Amo03g0030 Chr03 705619 707409 +
Arst Arst7g03113 Chr7 77372189 77375873 -
Lal Lal1g0585 Chr1 3749806 3754926 +
Lan Lan8g1367 Chr8 20515151 20519681 -
Lan Lan13g0587 Chr13 4697066 4701918 +
Pvu Pvu11g1590 Chr11 40373374 40374257 +
Acco Acco08g0909 Chr08 8380805 8385252 -
Accr Accr13g00896 Chr13 10338058 10341632 -
Alju Alju10g0931 Chr10 8670812 8676522 -
Car Car07g02141 Chr07 28022033 28040001 +
Dere Dere07g0126 Chr07 3045753 3052339 +
Glsi Glsi04g0971 Chr04 7969304 7975372 -
Lasa Lasa4g01563 Chr4 240961363 241000697 -
Lele Lele29g0689 Chr29 4349884 4352498 -
Lele Lele32g0668 Chr32 4227998 4230984 -
Mibi Mibi07g0900 Chr07 11710044 11714834 -
Phco Phco9g01720 Chr9 40634865 40649607 +
Sto Sto4g2933 Chr4 29812144 29817294 -
Tpr Tpr7g1990 Chr7 24359228 24375452 -
Vimu Vimu5g00373 Chr5 3429309 3435420 +
Pvu Pvu11g1591 Chr11 40488276 40491188 +
Accr Accr1g03030 Chr1 67056646 67058650 +
Bisa Bisa02g3072 Chr02 77555229 77557230 +
Car Car07g02143 Chr07 28123423 28126694 +
Enph Enph8g0458 Chr8 13303560 13306146 +
Lasa Lasa4g01562 Chr4 236821759 236823807 -
Lele Lele30g0711 Chr30 11657645 11659631 +
Lele Lele31g0849 Chr31 16062783 16064792 +
Phco Phco9g01723 Chr9 40725691 40728202 +
Sto Sto4g2931 Chr4 29788770 29790899 -
Tpr Tpr7g1989 Chr7 24325525 24328352 -
Vimu Vimu5g00374 Chr5 3463128 3463580 +
Vra Vra2g1314 Chr2 20869079 20871936 -
Pvu Pvu11g1592 Chr11 40662694 40666838 -
Ssu Ssu3g1901 Chr3 59696705 59700110 +
Pvu Pvu11g1593 Chr11 40681800 40683496 -
Aed Aed5g1111 Chr5 9413208 9414104 +
Bva Bva07g01794 Chr07 16397325 16397897 +
Car Car07g02158 Chr07 29203681 29205050 -
Cca Cca04g01381 Chr04 18042440 18043431 +
Dod Dod03g1891 Chr03 39909219 39910211 +
Gso Gso6g2083 Chr6 38767319 38768585 +
Lal Lal9g0499 Chr9 3379441 3380065 -
Lja Lja3g2449 Chr3 30299927 30301330 -
Mal Mal5g2387 Chr5 64999214 65000009 +
Phco Phco9g01726 Chr9 40816610 40818048 -
Pste Pste1g03940 Chr1 20357318 20358152 +
Pumo Pumo11g00726 Chr11 24971378 24971952 -
Rops Rops3g01823 Chr3 31307659 31308605 -
Seca Seca4g09461 Chr4 224102124 224102804 -
Spst Spst11g00655 Chr11 28748828 28749388 -
Ssu Ssu3g1855 Chr3 58066816 58067411 -
Tsu Tsu08g02053 Chr08 27240064 27241003 -
Viun Viun11g00889 Chr11 14031742 14032596 -
Pvu Pvu11g1594 Chr11 40701985 40703404 +
Aev Aev10g1415 Chr10 17517250 17518890 -
Bva Bva07g01793 Chr07 16392809 16393999 -
Gso Gso6g2082 Chr6 38750068 38752057 -
Lal Lal9g0500 Chr9 3382546 3383911 +
Phco Phco9g01727 Chr9 40827718 40829293 +
Spst Spst11g00654 Chr11 28744800 28746477 +
Ssu Ssu3g1852 Chr3 58037188 58038959 -
Tpr Tpr7g2110 Chr7 26886391 26887980 -
Vivi Vivi7g00234 Chr7 13256134 13261485 +
Pvu Pvu11g1595 Chr11 40726335 40727633 -
Car Car07g02159 Chr07 29241184 29242521 +
Cca Cca04g01382 Chr04 18044253 18045891 -
Gma Gma06g02294 Chr06 42805126 42806867 +
Pumo Pumo11g00724 Chr11 24950095 24950700 +
Spst Spst11g00653 Chr11 28735405 28741259 -
Viun Viun11g00893 Chr11 14168888 14170523 -
Pvu Pvu11g1596 Chr11 40746187 40747013 +
Gma Gma06g02290 Chr06 42738869 42745052 -
Mal Mal5g2378 Chr5 63735921 63737580 -
Phco Phco9g01731 Chr9 40856498 40856975 -
Spst Spst11g00652 Chr11 28707255 28708933 -
Ssu Ssu3g1850 Chr3 58024866 58027441 -
Pvu Pvu11g1597 Chr11 40747178 40747429 +
Adu Adu03g01676 Chr03 27820031 27822008 +
Ahy Ahy13g1808 Chr13 29464766 29466314 +
Aip Aip03g02001 Chr03 28362422 28363782 +
Apr Apr5g0081 Chr5 762158 763907 +
Arst Arst3g02237 Chr3 28158674 28160637 +
Cca Cca04g01383 Chr04 18050096 18052524 +
Gma Gma06g02289 Chr06 42728630 42729300 -
Lal Lal2g0561 Chr2 3393422 3394787 +
Lan Lan7g0578 Chr7 4454263 4455666 +
Phco Phco9g01732 Chr9 40863802 40864959 +
Pumo Pumo11g00722 Chr11 24940021 24941745 -
Viun Viun11g00894 Chr11 14180467 14182158 +