Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0934 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0936 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0938 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0939 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g03515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g1276 . . . . . . . Mtr1g2802 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g1611 . . . Tsu01g03270 . . . . . . . . . . . .
Vvi4g0940 Acco05g1359 . Accr3g01627 . . Adu06g00241 . . . . . . . . Alju07g1299 . . . . . . Arst6g00336 Bach3g01075 . Bisa05g1447 . Bva13g03516 Bva04g03441 . . . . Dere05g1097 . . . . . Glsi10g1754 . . . . . . . . . . . . . . . . . . . . . Lapu6g01021 Lapu6g01988 Lasa2g01482 . . . . . . . . . Lja1g3064 . . Mal1g1273 Mepo7g02074 Mepo3g04162 . . Mibi08g1126 . . Mtr1g2800 . . Phco3g00554 Phco11g01290 Prci2g2079 . . . Pste8g01518 . . Pte8g00622 . . Pumo9g02494 Pumo5g03849 Pvu8g2467 Pvu6g1131 Rops9g01027 Rops8g04182 Seca6g02367 Seca8g06191 Spst1g02287 Spst6g00523 . . . . . Tpr1g1612 . Trre13g05301 . Tsu01g03269 Vian7g01713 Vian6g01010 Vifa1g01674 . Vimu1g01139 Vimu2g01611 Viun8g02108 Viun6g01703 . Vivi6g05166 . .
Vvi4g0941 . . . . . Adu06g00240 . . . . . . . . . . . . . . . Arst6g00335 . . . . Bva13g03517 Bva04g03442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g01985 . . . . . . . . . . . . . . . Mepo3g04163 . Mesa25g00128 . . . . . . . Phco11g01286 . . . . . Pste5g03385 . . . . . Pumo5g03852 . Pvu6g1134 . Rops8g04183 . Seca2g05505 . Spst6g00527 . . . . . . . Trre13g05303 . . . Vian6g01013 . Vifa5g03971 . Vimu2g01607 . Viun6g01706 . Vivi6g05180 . .
Vvi4g0942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Acco Acco05g1359 Chr05 28772671 28773981 +
Acco Acco05g1359 Chr05 28772671 28773981 +
Accr Accr3g01627 Chr3 19889829 19891136 -
Accr Accr3g01627 Chr3 19889829 19891136 -
Alju Alju07g1299 Chr07 37774595 37775905 +
Alju Alju07g1299 Chr07 37774595 37775905 +
Bach Bach3g01075 Chr3 21138417 21139718 +
Bisa Bisa05g1447 Chr05 25965629 25966939 +
Bisa Bisa05g1447 Chr05 25965629 25966939 +
Dere Dere05g1097 Chr05 17608745 17610049 -
Dere Dere05g1097 Chr05 17608745 17610049 -
Glsi Glsi10g1754 Chr10 12089766 12091067 -
Glsi Glsi10g1754 Chr10 12089766 12091067 -
Lapu Lapu6g01021 Chr6 10291629 10293192 +
Lapu Lapu6g01021 Chr6 10291629 10293192 +
Lasa Lasa2g01482 Chr2 461017680 461018999 -
Mepo Mepo7g02074 Chr7 31071210 31073007 +
Mibi Mibi08g1126 Chr08 26189269 26191069 +
Mibi Mibi08g1126 Chr08 26189269 26191069 +
Phco Phco3g00554 Chr3 4343353 4344666 +
Prci Prci2g2079 Chr2 15892378 15894007 -
Prci Prci2g2079 Chr2 15892378 15894007 -
Pste Pste8g01518 Chr8 8407977 8409287 -
Pste Pste8g01518 Chr8 8407977 8409287 -
Pte Pte8g00622 Chr8 28816424 28817989 +
Pumo Pumo9g02494 Chr9 59608543 59610425 -
Pvu Pvu8g2467 Chr8 55277984 55280310 -
Rops Rops9g01027 Chr9 16880622 16882151 -
Seca Seca6g02367 Chr6 85760595 85761902 -
Spst Spst1g02287 Chr1 31601353 31602690 -
Vian Vian7g01713 Chr7 26858226 26859533 -
Vifa Vifa1g01674 Chr1 274778632 274779951 -
Vimu Vimu1g01139 Chr1 8706316 8707617 -
Vimu Vimu1g01139 Chr1 8706316 8707617 -
Viun Viun8g02108 Chr8 31493695 31495372 +
Vvi Vvi4g0934 Chr4 15084285 15085366 -
Vvi Vvi4g0935 Chr4 15089604 15090672 +
Vvi Vvi4g0936 Chr4 15108330 15108717 +
Vvi Vvi4g0937 Chr4 15123328 15124227 -
Vvi Vvi4g0938 Chr4 15151574 15152755 -
Vvi Vvi4g0939 Chr4 15167055 15175233 +
Bva Bva13g03515 Chr13 23861018 23866015 +
Mal Mal1g1276 Chr1 16231708 16234848 -
Mtr Mtr1g2802 Chr1 39180473 39183709 -
Tpr Tpr1g1611 Chr1 15107369 15113174 +
Tsu Tsu01g03270 Chr01 40503506 40507945 -
Vvi Vvi4g0940 Chr4 15210734 15212657 +
Acco Acco05g1359 Chr05 28772671 28773981 +
Accr Accr3g01627 Chr3 19889829 19891136 -
Adu Adu06g00241 Chr06 2915340 2917191 -
Alju Alju07g1299 Chr07 37774595 37775905 +
Arst Arst6g00336 Chr6 2967908 2970396 -
Bach Bach3g01075 Chr3 21138417 21139718 +
Bisa Bisa05g1447 Chr05 25965629 25966939 +
Bva Bva13g03516 Chr13 23867999 23870511 +
Bva Bva04g03441 Chr04 27356445 27357530 +
Dere Dere05g1097 Chr05 17608745 17610049 -
Glsi Glsi10g1754 Chr10 12089766 12091067 -
Lapu Lapu6g01021 Chr6 10291629 10293192 +
Lapu Lapu6g01988 Chr6 19645228 19647374 -
Lasa Lasa2g01482 Chr2 461017680 461018999 -
Lja Lja1g3064 Chr1 37172673 37176742 -
Mal Mal1g1273 Chr1 16208408 16210498 -
Mepo Mepo7g02074 Chr7 31071210 31073007 +
Mepo Mepo3g04162 Chr3 50751718 50754241 +
Mibi Mibi08g1126 Chr08 26189269 26191069 +
Mtr Mtr1g2800 Chr1 39172120 39174488 -
Phco Phco3g00554 Chr3 4343353 4344666 +
Phco Phco11g01290 Chr11 9638571 9640042 -
Prci Prci2g2079 Chr2 15892378 15894007 -
Pste Pste8g01518 Chr8 8407977 8409287 -
Pte Pte8g00622 Chr8 28816424 28817989 +
Pumo Pumo9g02494 Chr9 59608543 59610425 -
Pumo Pumo5g03849 Chr5 88514519 88516240 +
Pvu Pvu8g2467 Chr8 55277984 55280310 -
Pvu Pvu6g1131 Chr6 22458554 22460522 +
Rops Rops9g01027 Chr9 16880622 16882151 -
Rops Rops8g04182 Chr8 84293787 84296139 +
Seca Seca6g02367 Chr6 85760595 85761902 -
Seca Seca8g06191 Chr8 155915347 155917283 -
Spst Spst1g02287 Chr1 31601353 31602690 -
Spst Spst6g00523 Chr6 4847392 4848881 +
Tpr Tpr1g1612 Chr1 15114184 15116448 +
Trre Trre13g05301 Chr13 58143277 58145314 +
Tsu Tsu01g03269 Chr01 40499839 40501988 -
Vian Vian7g01713 Chr7 26858226 26859533 -
Vian Vian6g01010 Chr6 27429102 27430599 +
Vifa Vifa1g01674 Chr1 274778632 274779951 -
Vimu Vimu1g01139 Chr1 8706316 8707617 -
Vimu Vimu2g01611 Chr2 11338416 11339923 -
Viun Viun8g02108 Chr8 31493695 31495372 +
Viun Viun6g01703 Chr6 24688833 24690760 +
Vivi Vivi6g05166 Chr6 156051157 156053752 +
Vvi Vvi4g0941 Chr4 15225940 15227765 -
Adu Adu06g00240 Chr06 2909596 2911800 +
Arst Arst6g00335 Chr6 2962422 2964586 +
Bva Bva13g03517 Chr13 23872083 23874216 -
Bva Bva04g03442 Chr04 27358547 27360303 -
Lapu Lapu6g01985 Chr6 19618684 19621330 +
Mepo Mepo3g04163 Chr3 50759440 50763039 -
Mesa Mesa25g00128 Chr25 1382076 1383217 +
Phco Phco11g01286 Chr11 9610466 9611593 +
Pste Pste5g03385 Chr5 27252880 27254726 -
Pumo Pumo5g03852 Chr5 88566465 88568399 -
Pvu Pvu6g1134 Chr6 22483379 22485846 -
Rops Rops8g04183 Chr8 84309987 84311933 -
Seca Seca2g05505 Chr2 141556108 141558780 -
Spst Spst6g00527 Chr6 4868774 4869908 -
Trre Trre13g05303 Chr13 58152109 58153200 -
Vian Vian6g01013 Chr6 27452982 27453982 -
Vifa Vifa5g03971 Chr5 1266908225 1266909064 +
Vimu Vimu2g01607 Chr2 11284469 11286447 +
Viun Viun6g01706 Chr6 24715598 24717667 -
Vivi Vivi6g05180 Chr6 156222700 156224110 -
Vvi Vvi4g0942 Chr4 15271624 15280115 +
Vvi Vvi4g0943 Chr4 15301148 15309335 +
Acco Acco05g1359 Chr05 28772671 28773981 +
Accr Accr3g01627 Chr3 19889829 19891136 -
Alju Alju07g1299 Chr07 37774595 37775905 +
Bach Bach3g01075 Chr3 21138417 21139718 +
Bisa Bisa05g1447 Chr05 25965629 25966939 +
Dere Dere05g1097 Chr05 17608745 17610049 -
Glsi Glsi10g1754 Chr10 12089766 12091067 -
Lapu Lapu6g01021 Chr6 10291629 10293192 +
Lasa Lasa2g01482 Chr2 461017680 461018999 -
Mepo Mepo7g02074 Chr7 31071210 31073007 +
Mibi Mibi08g1126 Chr08 26189269 26191069 +
Phco Phco3g00554 Chr3 4343353 4344666 +
Prci Prci2g2079 Chr2 15892378 15894007 -
Pste Pste8g01518 Chr8 8407977 8409287 -
Pte Pte8g00622 Chr8 28816424 28817989 +
Pumo Pumo9g02494 Chr9 59608543 59610425 -
Pvu Pvu8g2467 Chr8 55277984 55280310 -
Rops Rops9g01027 Chr9 16880622 16882151 -
Seca Seca6g02367 Chr6 85760595 85761902 -
Spst Spst1g02287 Chr1 31601353 31602690 -
Vian Vian7g01713 Chr7 26858226 26859533 -
Vifa Vifa1g01674 Chr1 274778632 274779951 -
Vimu Vimu1g01139 Chr1 8706316 8707617 -
Viun Viun8g02108 Chr8 31493695 31495372 +
Lapu Lapu6g01021 Chr6 10291629 10293192 +