Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01290 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCAGCGTCGGAATTGAAGGAGAAGTTGAGGGAATTAGTGAAGGCTATCGTGGACTCCGACGACTACACGGTGGAAGCCGCCGACGAAACCATCGCCACCCTTTCGGCTCTCAAACATATTAAGTCTCCAAACTCTTTGGACGACTTTCCCCTTCCTCCCGAATTTCGATGCCCCATTTCAACCCAGTTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAGAGGTGGTTGAATGAGGGCCACAGAACGTGTCCGCAGACCCAGCAGGTCTTGTCTCACTCAATTTTAACACCGAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGTAGGGACCGTGGAATTGAGCTTCCTAAGCCTGTTAATGACATTGATGAAGTGGTAACTAATTCGGATAGGAACCATTTGAATTCGTTGCTTCGCAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCCAAGGAGCTGCGCCTTTTGACAAAGCGAATGCCTTCGATTCGAATCCTTGTTGGAGAGTCCAGTGATGTGATTCCCCAATTGCTGAGTCCATTATCATCGCCTGGCACGGCTTCTACTGACCCTGATCTCCAAGAGGACTTGATCACCACGGTTCTCAATCTCTCTATCCATGATGATAACAAAAAGGCCTTTGCAGAGGATCCTGCAGTGATTTCTCTGCTTATTGATGCCTTGAAAAGTGGAACAATTCAAACGAGGAGCAATGCTGCTGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAACACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGAGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTTTGTCTTGTGCACGAGAATAAAGGGAGGACAGTGCGAGATGGGGCGGTTCGGGTTATTCTGAAGAAGATGATGGACCGCATTCTGGTTGATGAGTTGTTGGCTATACTGGCACTCCTATCCAGTCATCCCAGGGCTATTGAAGAAATGGGTGATCTAGGTGCTGTTCCTCTGTTATTGGGGATTATTAGGGAGAGCACATCGGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCAAATGGTACACTGTTAAAGCTTGCACAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAACTGTATTCTTGAAAGGCTTAATAGATCCCCCTCCTTAACACACACTGCTTAG 1332 0.4625 MAKRERVRGVSASELKEKLRELVKAIVDSDDYTVEAADETIATLSALKHIKSPNSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRDRGIELPKPVNDIDEVVTNSDRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILVGESSDVIPQLLSPLSSPGTASTDPDLQEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILKKMMDRILVDELLAILALLSSHPRAIEEMGDLGAVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLLKLAQCGTSRAKRKANCILERLNRSPSLTHTA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01290 443 CDD RING-Ubox_PUB 62 114 IPR045210 -
Phco11g01290 443 Gene3D - 335 437 IPR011989 -
Phco11g01290 443 FunFam RING-type E3 ubiquitin transferase 338 439 - -
Phco11g01290 443 SMART arm_5 351 392 IPR000225 GO:0005515
Phco11g01290 443 SMART arm_5 229 270 IPR000225 GO:0005515
Phco11g01290 443 SMART arm_5 271 311 IPR000225 GO:0005515
Phco11g01290 443 SMART arm_5 181 228 IPR000225 GO:0005515
Phco11g01290 443 FunFam RING-type E3 ubiquitin transferase 60 134 - -
Phco11g01290 443 SUPERFAMILY ARM repeat 143 433 IPR016024 -
Phco11g01290 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Phco11g01290 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Phco11g01290 443 Gene3D - 191 334 IPR011989 -
Phco11g01290 443 FunFam RING-type E3 ubiquitin transferase 191 335 - -
Phco11g01290 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Phco11g01290 443 PANTHER U BOX DOMAIN-CONTAINING 14 433 - -
Phco11g01290 443 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
Phco11g01290 443 SUPERFAMILY RING/U-box 49 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01290 Phco-Chr11 9638571 9640042 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01290 11 9638571 9640042 Phco11g01290 11 9638571 9640042 ECH