Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1092 ATGGCTGAAATAACAACCTTTCTTCTCATCTTCTCATACTTGTTCATGGCTGCGCTTATCCCTCTTTCAATCCATTCCCAGCCCACACACACAATCACATCAGGCCAAAATCTCACTGATTCGGAGCGCATGGTCTCTGCAAATGGTGTATTCACACTAGGGTTCTTCAGCCCTGGTAAGTCTAAGCACCGTTACTTAGGCATGTGGTACACCAAAGACGAAGCTCAGAGAGTGGTTTGGGTTGCTAATAGGTTAATCCCCATCACCAACTCATCGGGAGTTCTCACTATCGGGGATGATGGGAGACTGAAAATTAAGCAGAGTGGGGGATTGCCCATTGTCTTGAATACAGATCAAGCTGCCAAGCACAATGCCACAGCCACTTTGCTGGATTCCGGAAACCTTGTTCTTACACATATGATCAATGACAATGGAGCTTTCAAAAGGGAGACAGTATGGCAAAGTTTTGATCACCCTTCAGACACGCTCCTCCCGGGAATGAAACTTGCTGTGAACCTTAAGGTTGGAAGTAACCGGTCGCTGACTTCATGGTTAAGCCATGAAGTCCCCGCACCAGGAGCTTTCACTCTAGGCCTGGACCCGACAGTGGATGATTCATGCCAAGTAGTGATATGGAGGCGCGGGATTGTCCTCTGGACGAGTGGCATCTGGGAAGACAATAGTACCCATTTTGAGGATTGGTGGAATACCTATAATGTTAGCTTTGCTTGTGTTGTTGTAAGCAAGTATGAGAAGTATTTCAATTATACATATGCAGATCATAGCCATCTTTCAAGGTTGGTGATGGGTGCATGGAGACAGGTCAAATTTAATAGCTTTTCTGAGTTTGCGATTACTCTATGTGAAGGTAGAAATCCAATTCTAAGTTCTGGGTGTGTGGAGGAGGAATCCAAGTGTGGAAGGCACCATAGAACTGCGTTCAGGTTTAAGAACAAATACATGAAAAGAAGAGCAGAATACAGTGATGATGATCCCAACTTGGGTATCGCTGATTGCGATGCCAAGTGCAAGGAGAATTGCTCTTGTATTGCTTATGCTTCGGCTCACAAAAATGGAACCGGATGTCATTTTTGGCTTCAAAATAGTCCTCCCGTGGAGGGGGCAATTCTTGGGTTGGATGCCTATGTTTCAGATCAGGAACTGAATAAAGGTAAGGCAAGCTTAATCTCACGTTCCTCGTTCCCAATTTTCTTCCTATTATTTTTTTAA 1230 0.4472 MAEITTFLLIFSYLFMAALIPLSIHSQPTHTITSGQNLTDSERMVSANGVFTLGFFSPGKSKHRYLGMWYTKDEAQRVVWVANRLIPITNSSGVLTIGDDGRLKIKQSGGLPIVLNTDQAAKHNATATLLDSGNLVLTHMINDNGAFKRETVWQSFDHPSDTLLPGMKLAVNLKVGSNRSLTSWLSHEVPAPGAFTLGLDPTVDDSCQVVIWRRGIVLWTSGIWEDNSTHFEDWWNTYNVSFACVVVSKYEKYFNYTYADHSHLSRLVMGAWRQVKFNSFSEFAITLCEGRNPILSSGCVEEESKCGRHHRTAFRFKNKYMKRRAEYSDDDPNLGIADCDAKCKENCSCIAYASAHKNGTGCHFWLQNSPPVEGAILGLDAYVSDQELNKGKASLISRSSFPIFFLLFF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1092 409 CDD B_lectin 38 159 IPR001480 -
Vvi17g1092 409 FunFam Receptor-like serine/threonine-protein kinase SD1-8 24 156 - -
Vvi17g1092 409 Gene3D - 23 157 IPR036426 -
Vvi17g1092 409 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Vvi17g1092 409 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 368 - -
Vvi17g1092 409 SMART blect_4 35 159 IPR001480 -
Vvi17g1092 409 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 187 IPR036426 -
Vvi17g1092 409 Pfam PAN-like domain 332 368 IPR003609 -
Vvi17g1092 409 Pfam D-mannose binding lectin 78 184 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1092 Vvi-Chr17 15070080 15071309 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1092 - - vvi:100258202 815.453