Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1088 ATGCTTCGCTCAACTGGTGTCTCCCAATTCTGGGCCAAAACGACGTCGTCCCCACTGAAAACGACGTCGTTCAGGCTCATCTTCACCAACTCCACCCATGACGAAGATCTCTACGCCACTTTGCTCCGCAGATTCGCCGAAACCAGAGACTCCCAGCATGGCCGGGCACTCCACGCCAAGCTCATCAAAGGGCCTCTTCACAATTCTCTCTTCCTCAACAACCACATCCTCAACATGTACGCCAAATGCGGTCACTTGCCCCATGCGCACAAGCTGTTCGATCATTTTCCGCACAGAAATGCTGTGTCGTGGTCCGTCCTCATTGCGGGCTTTGTCCAGCACAACCGGCCCAGCTGCGCGCTGGTGCTATTCTCACAAATGCACGCTGCTGGAGTCAATATCAACGAGTTTACCTTGGTCAGCGCACTACACGCATGCTCATTGTATGATAATGATAGTGATAATAATGAAGGATATTACTATTCTTACTATCTGAGTCGTTTGTATCAAGTGTACGCCTTTGTTGTTCGGTTGGGATTTGAGTGGAATGTATTCTTGATGAACGTGTTTATGACAGCATTGATAAGAAGTAGGAAGTTGGCGGAGGCGTTGGAAGTTTTTGAGGCGTGTAGGGGCAAGGATGTTGTGTCGTGGAACGCAGTGATGGCGGGGTTGGTGCAGTTTTGTTGTGGGGAAGTGCCAGGGTTTTGGAGGAGGATGTGCTGTGAGGGAGTGAAGCCTGATAACTTCGCCTTTTCAGGAGTTCTTTCTGGGTTGGCTGCTCTTGGTGATGGTGGAATGGGGGTGCAAGTGCATGGACAGCTTGTGAAGTGTGGGCATGGAGGCGAGGTTTGCATTGGGAATTCGCTGGTTGATATGTATTTGAAGTGTGGAAGTTTGGAGAATGGCATCAAGGCTTTTGAGGAAATGGTGGAGCGCGATGTCTGTACTTGGAATCAGATGGCTGCAGGGTGCCTGAACTGTGGGAAACCGGGTAGAGCGCTTGAGTTGATTGAGGAAATGAGGAGAAGCGGTGTGAGAATGAACAAGTTCACCCTTGCCACTGCCCTTACTGCCTGTGCCAACTTGGCTTCCTTGGAGGAGGGGAAGAAAGCCCATGGATTAAGAATTAAGCTCGGGAATGATGTTGATGTCTGCGTGGATAATGCCTTGCTTGACATGTATGCCAAGTGTGGATCCATGGGTGATGCCCTGAAGGTCTTTGGGACAGTGGAGGCTCGTTCAGTTGTTTCATGGACAACCATGATCATGGGGTTTGCGCAAAATGGCCAAGCAAGGAAAGCACTTGAGATTTTTGAACAGATGAGAGCTGAGGGCAAAGCACCAAACTACATCACCTTCATTTGCGTGCTCTACGCATGTAGCCAAGGAGGGTTGATTAATGAAGGGTGGGAATATTTCTTGTCCATGGACCGGGACCATGGAATATCACCTGGAGAAGATCACTATGCATGTATGGTTGATATGCTTGGGCGAGCAGGACACATTAAAGAAGCACGTGAGCTAATAAGGAGGATGCCATTTCAGGCTAGTGTGCTAGTGTGGCAGACTCTGCTAGGAGCTTGCCGGGTTCATGGCGATGTGGAAACAGGATTACTTGCAGCAAAGCAGGCGTTGAGCTTGGACAAACACGATTCTTCAACTTATGTGGTATTATCAAACATGTTTGCTGACGGACGGAATTGGAAAGGTGTTGGTAGTTTGAGGGAACTGATGGAAACTAGAGATGTAAAGAAAATGCCCGGTTCAAGTTGGATTCAGCTAAACAAAAGGTAA 1797 0.4891 MLRSTGVSQFWAKTTSSPLKTTSFRLIFTNSTHDEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVSWNAVMAGLVQFCCGEVPGFWRRMCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQASVLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETRDVKKMPGSSWIQLNKR* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1088 598 FunFam Pentatricopeptide repeat-containing protein mitochondrial 268 374 - -
Vvi17g1088 598 Pfam PPR repeat 102 132 IPR002885 -
Vvi17g1088 598 Pfam PPR repeat 490 513 IPR002885 -
Vvi17g1088 598 Pfam PPR repeat 389 409 IPR002885 -
Vvi17g1088 598 Gene3D Tetratricopeptide repeat domain 373 468 IPR011990 GO:0005515
Vvi17g1088 598 Gene3D Tetratricopeptide repeat domain 164 273 IPR011990 GO:0005515
Vvi17g1088 598 Gene3D Tetratricopeptide repeat domain 274 372 IPR011990 GO:0005515
Vvi17g1088 598 Gene3D Tetratricopeptide repeat domain 15 156 IPR011990 GO:0005515
Vvi17g1088 598 Pfam PPR repeat family 313 362 IPR002885 -
Vvi17g1088 598 Pfam PPR repeat family 415 461 IPR002885 -
Vvi17g1088 598 NCBIfam pentatricopeptide repeat 102 135 IPR002885 -
Vvi17g1088 598 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Vvi17g1088 598 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Vvi17g1088 598 NCBIfam pentatricopeptide repeat 452 486 IPR002885 -
Vvi17g1088 598 Pfam E motif 532 594 IPR046848 -
Vvi17g1088 598 SUPERFAMILY TPR-like 390 561 IPR011990 GO:0005515
Vvi17g1088 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 597 IPR046960 GO:0003723|GO:0009451
Vvi17g1088 598 Gene3D Tetratricopeptide repeat domain 469 596 IPR011990 GO:0005515
Vvi17g1088 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Vvi17g1088 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi17g1088 598 FunFam Pentatricopeptide repeat-containing protein chloroplastic 52 152 - -
Vvi17g1088 598 FunFam Pentatricopeptide repeat-containing protein At4g32430, mitochondrial 164 267 - -
Vvi17g1088 598 FunFam Pentatricopeptide repeat-containing protein At4g33170 family 385 597 - -
Vvi17g1088 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1088 Vvi-Chr17 14953743 14955539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1088 38 598 Glycoside Hydrolase AT3G49170 34.392 7.46e-107 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1088 - - vvi:100261478 1186.4