Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1089 ATGGATCACAAAAGAGATGAAGAGAATGGTTTGGATGGAAACTACAATTCAGAAGTGGAAACTGAACACATGAAGAAGATGGAGAAGGAGAACCAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGATGTCGGTGGAGCGGATTTTTGAAGGCAAGGAAGTACCATCATGGAGAGAACAGCTGACAGTGAGGGCCTTCGTGGTGAGCTTCGTACTGTCAGTGCTCTTCACCTTCATAGTGATGAAACTCAACCTCACCACTGGTATCATCCCTTCCCTCAACGTCTCTGCGGGGCTCTTGGGTTTCTTCTTCGTCTCGGTTTGGACAAAGTTTCTTGACAAGTCTGGGCTCTTGAAGCAGCCCTTCACTCGACAAGAGAACACTGTTATCCAGACTTGCGTCGTGGCCTCCTCTGGCATCGCCTTCAGCGGAGGTTTTGGAAGCTACCTTTTCGGAATGAGTCAAGCTATTGCTAAACAATCTGAAAATGCTGGAGGCAACGAGGAATATAAGAACCCAGCAGTAGCATGGATGATTGGCTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTTTCTGTCGTGCCTCTTCGAAAGATCATGATTGTAGACTTCAAATTGACATACCCAAGTGGTACTGCAACTGCTCATCTCATCAACAGTTTTCACACTCCTCAAGGAGCCAAGTTGGCAAAGAAACAAGTTAGAGTATTGGGCAAGTACTTCTCCTTCAGCTTCTTGTGGGGTTTCTTCCAATGGTTTTTTGCTGCTGGAGACAATTGCGGATTTGCAGGCTTCCCTACGTTTGGACTTAAAGCATACAAATACAAGTTTTTCTTTGATTTCTCGGCAACTTATGTTGGAGTGGGGATGATTTGTCCGCATATAGTAAACATATCGCTGCTGGTTGGAGGAATTCTTTCTTGGGGAGTTATGTGGCCGCTTATAGAAACTAGAAAGGGTGATTGGTACCCTGCAGACCTTCCCTCAAGCAACATTCGTGGTCTTCAAGGTTACAAGATATTCATCGCCATTGCAACAATCCTAGGTGACGGGCTATATAACTTTTTCAAGGTACTGGGTCAAACTCTCTTGGGATTGTTTTACCAACTCCAATACAAAAATATGAGCGGTGTCCCACCCATTGAGGATCGCTCCTCTCCTAGGAGCTCATCTACTTCTTACAATGATACTCGTCGGACACAAGTTTTCCTCAAAGATCAAATTCCGACATCATTTGCTATTGGAGGGTACATTGCAATAGCTGCAATCTCCATGGCCACACTTCCTCACATATTTCCCCAACTCAAATGGTACTACATACTGGTTATCTATCTTGTTGCTCCTACCATGGCGTTTTGCAATGCATATGGGTGTGGGCTCACTGACTGGTCTCTTGCATCCACCTATGGGAAGCTTGCCATCTTTAGCATTGGAGCATGGGCTGGTGCTGCACATGGTGGAGTTATAGCAGGCCTGGCAGCCTGTGGAGTTATGATGAACATTGTATCAACCGCTTCCGACCTAATGCAGGATTTCAAGACTGGTTATCTAACCTTAGCTTCACCACGCTCAATGTTTGTGAGCCAATTCATTGGTACTGCAATGGGTTGTGTCATCTCCCCTTGTGTCTTTTGGCTGTTCTACAAGGCTTTTGATGACCTTGGGCAGAGTGGAAGTGAATACCCTGCTCCTTATGCTCTGGTCTACCACAACATGGCTGTTCTTGGGGTAGAGGGCATCTCCAATTTACCAAAGAACTGTTTCACGCTTTGTTGTGTGTTTTTTGGTGCAGCAATTCTCGTGAATTTGGTTAGGGATGCTGTAGGTCGAAAGAGGGCGCAGTTCATTCCAATCCCAATGGCAATGGCAATACCATTTTATCTGGGCCCTTACTTCGCCATTGATATGTGTGTTGGTAGCTTAATATTATTTATATGGCAAAGGATAAACAAAGCTAAGGCAGAAGCTTTTGGACCTGCAGTAGCTTCTGGCTTGATTTGTGGAGAGGGAATATGGACTCTGCCTGGTTCAATTCTTGCTTTAGCAGGAATAAAGCAACCAATTTGCATGAAGTTCCTGTCTAGGGCAACAAATGCCAGGGTTGATAAGTTCCTAGGGGCTTAA 2127 0.4495 MDHKRDEENGLDGNYNSEVETEHMKKMEKENQEEKEEEEEEEEMSVERIFEGKEVPSWREQLTVRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVSVWTKFLDKSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSQAIAKQSENAGGNEEYKNPAVAWMIGFLFVVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRVLGKYFSFSFLWGFFQWFFAAGDNCGFAGFPTFGLKAYKYKFFFDFSATYVGVGMICPHIVNISLLVGGILSWGVMWPLIETRKGDWYPADLPSSNIRGLQGYKIFIAIATILGDGLYNFFKVLGQTLLGLFYQLQYKNMSGVPPIEDRSSPRSSSTSYNDTRRTQVFLKDQIPTSFAIGGYIAIAAISMATLPHIFPQLKWYYILVIYLVAPTMAFCNAYGCGLTDWSLASTYGKLAIFSIGAWAGAAHGGVIAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQFIGTAMGCVISPCVFWLFYKAFDDLGQSGSEYPAPYALVYHNMAVLGVEGISNLPKNCFTLCCVFFGAAILVNLVRDAVGRKRAQFIPIPMAMAIPFYLGPYFAIDMCVGSLILFIWQRINKAKAEAFGPAVASGLICGEGIWTLPGSILALAGIKQPICMKFLSRATNARVDKFLGA* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1089 708 Pfam OPT oligopeptide transporter protein 61 680 IPR004813 GO:0035673
Vvi17g1089 708 Coils Coil 17 49 - -
Vvi17g1089 708 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 35 695 IPR045035 GO:0035673
Vvi17g1089 708 MobiDBLite consensus disorder prediction 1 46 - -
Vvi17g1089 708 NCBIfam OPT family oligopeptide transporter 59 677 IPR004813 GO:0035673
Vvi17g1089 708 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1089 Vvi-Chr17 14981360 14986187 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1089 - - vvi:100249683 1325.84