Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1084 ATGGATCTACACTATGCATACCATCAGGGGCCTGGACATGAGACCGATCGATGCACCGCTTTGAGGCATGCCGTTCAGGATTTGATCGACCAGGGTTTGGTACACTTGGGTCAGCCGAGTGTGACCACGAACCCATTGCCTGCTCACACCACACATGCAGTCCCTCCACCAGCCGATGACATTCATTTCTTAGAGTTTGATGAGATCGATGACCACATCCACATGCTGAGTGATGATGATTCAGACCCAGAGCCCATCATGCCAGGTGTGATTTATGAGATGAGTGGGGTGACTCTAGGTCCTCGGACGCCTGCTCCATTCCGATTAGTGCCCGAGGTGGCGTCAGTGCAGGCTGCCACCGTTGAGCCATTGATTTTGCCGCATTACAGTGTCCGGACGCCTTTCATCTTGATCCCGGATGTTGAGGAGGTCCAGGCTCCGTGCGTTGATGACTCTCAGACTCTGGACATTCAGTATGTTCTTCGAGGAGGCAGAGTGATGCGACAGCCACCTCCCGCGGCAGCTAGGCCAGTTGAGGGTACGTCCGCTCCCGAGGAGGTCAGAGCCGAGGACGATGAGATATTGAGACAGTTGCGGAGCACTCAGGCTCGTATTTCCATTTGGAGCCTATTGGCGTCCTCGAGCACTCATCGTGATGCTCTGATTCAGGCTTTGAGCCAGATCCGAGTCGAGACTACCCCCTCCCCCGAGGGATTGATCCATATGATGACTGCCGGCAGAGCCACTTGCATCGTCTTTTCCGATGATGACTTGCCACCAGAGGGTTCAGACCACACGCGTCCTCTCTATATATCTGTTGGCTTTTCAGGTCGTCGAGTTCCATCTGTCCTTCTGGACAATGGCTCGGCCCTGAACGTATGTCCTCTGGCCACCGCCATCGCTCTTGGATACGCTCCTTCTGATTTTAGTCCATCCACTCAGACCGTCCGAGCTTATGACAGTACTCGGAGGGAGGTCATGGGTATATTGGAGATCGAGTTGCTGATTGGTCTAGCCACTTTTGTCGCCGTGTTTCAGGTTTTGAGGATTCCTACATCCTTTAACCTGCTTTTGGGCCGACCGTGGATTCACCGAGCTGGAGCCATTCCTTCTTCACTTCATCAGAAAGTGAAGTTCATCCATGATGGTCAGGTCGTCGTGGTACAGTCTGTGGGGGACATGTTCATTGCTGTCGAGCCTGTGCTCGAGATTAGTCACACTGATGACGATATTTTTCTGACTGGATTCACCTTCGATGAGGTGCAGACCGTGGAGATAAAGGATTTCTGCCGGGATTTTGTGGCCATGTCCTTTGACCAGCATGGGAGCACAGTGGTGCTCGATATTATGCGGAGCATGTCCTATCTACCCGGCATGGGGTTGGGTCGACGTCAGCATGGACCGAGCGAGTTCATCACCATTCCTGATCATGACATACCATTTGGGCTTGGGTTCATCCCCACCGAGGCTGACTATCGATACATGGTGCGTTTGCGCAAGGAGAGAGTGAGGGCTCGGCTGACCCACACGCCTTTTGACTATCCTCTTCGCCCATACATCAGGAGCTTATCTGATTACTTTGTGAGGGCATCGGAGTCACACGCACCATCTGATGGGATCATCGGAGGACTCAGCACCACCCAGGAGGCCGAGCTTCAGCGCCTCGTCCAGCAGTTACAGTTGAGTGACGAAGCCCCTGGCCCTTCGGCTTCTGTGTTGATTGCTCCTCCCTCCCCAGATCGCACGAGCCTTATGACGCTTTGCTTCCCGGATGAGATTGATGATCACTGGACTTTTGCCGAGATTGGAGACGTAGTGGATGGAGCCGTGCCGCGCGACGAGTACGTTGATGAGATGCTCGCAATGAGCTTGAGCCAGACCGAGGAGATAGCCCCACCGGAGCTCGCTTCACCATTTGATCTCTTCGGGGTGTCCGTCCTCGAGATCGCCGAGGAGATCCAGCTGATGGGATGCTATTATTGTGCTTGGACCGTGCCTCCGCCGATCGAGTGA 2013 0.5415 MDLHYAYHQGPGHETDRCTALRHAVQDLIDQGLVHLGQPSVTTNPLPAHTTHAVPPPADDIHFLEFDEIDDHIHMLSDDDSDPEPIMPGVIYEMSGVTLGPRTPAPFRLVPEVASVQAATVEPLILPHYSVRTPFILIPDVEEVQAPCVDDSQTLDIQYVLRGGRVMRQPPPAAARPVEGTSAPEEVRAEDDEILRQLRSTQARISIWSLLASSSTHRDALIQALSQIRVETTPSPEGLIHMMTAGRATCIVFSDDDLPPEGSDHTRPLYISVGFSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFSPSTQTVRAYDSTRREVMGILEIELLIGLATFVAVFQVLRIPTSFNLLLGRPWIHRAGAIPSSLHQKVKFIHDGQVVVVQSVGDMFIAVEPVLEISHTDDDIFLTGFTFDEVQTVEIKDFCRDFVAMSFDQHGSTVVLDIMRSMSYLPGMGLGRRQHGPSEFITIPDHDIPFGLGFIPTEADYRYMVRLRKERVRARLTHTPFDYPLRPYIRSLSDYFVRASESHAPSDGIIGGLSTTQEAELQRLVQQLQLSDEAPGPSASVLIAPPSPDRTSLMTLCFPDEIDDHWTFAEIGDVVDGAVPRDEYVDEMLAMSLSQTEEIAPPELASPFDLFGVSVLEIAEEIQLMGCYYCAWTVPPPIE* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1084 670 CDD retropepsin_like 271 364 - -
Vvi17g1084 670 MobiDBLite consensus disorder prediction 168 187 - -
Vvi17g1084 670 Gene3D Acid Proteases 258 387 IPR021109 -
Vvi17g1084 670 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 4 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1084 Vvi-Chr17 14803357 14807881 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1084 - - vvi:109122754 1169.84